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Predicting cellular responses to complex perturbations in high-throughput screens.
Lotfollahi M, Klimovskaia Susmelj A, De Donno C, Hetzel L, Ji Y, Ibarra IL, Srivatsan SR, Naghipourfar M, Daza RM, Martin B, Shendure J, McFaline-Figueroa JL, Boyeau P, Wolf FA, Yakubova N, Günnemann S, Trapnell C, Lopez-Paz D, Theis FJ. Lotfollahi M, et al. Among authors: yakubova n. Mol Syst Biol. 2023 Jun 12;19(6):e11517. doi: 10.15252/msb.202211517. Epub 2023 May 8. Mol Syst Biol. 2023. PMID: 37154091 Free PMC article.
Results of the 2020 fastMRI Challenge for Machine Learning MR Image Reconstruction.
Muckley MJ, Riemenschneider B, Radmanesh A, Kim S, Jeong G, Ko J, Jun Y, Shin H, Hwang D, Mostapha M, Arberet S, Nickel D, Ramzi Z, Ciuciu P, Starck JL, Teuwen J, Karkalousos D, Zhang C, Sriram A, Huang Z, Yakubova N, Lui YW, Knoll F. Muckley MJ, et al. Among authors: yakubova n. IEEE Trans Med Imaging. 2021 Sep;40(9):2306-2317. doi: 10.1109/TMI.2021.3075856. Epub 2021 Aug 31. IEEE Trans Med Imaging. 2021. PMID: 33929957 Free PMC article.
Using Deep Learning to Accelerate Knee MRI at 3 T: Results of an Interchangeability Study.
Recht MP, Zbontar J, Sodickson DK, Knoll F, Yakubova N, Sriram A, Murrell T, Defazio A, Rabbat M, Rybak L, Kline M, Ciavarra G, Alaia EF, Samim M, Walter WR, Lin DJ, Lui YW, Muckley M, Huang Z, Johnson P, Stern R, Zitnick CL. Recht MP, et al. Among authors: yakubova n. AJR Am J Roentgenol. 2020 Dec;215(6):1421-1429. doi: 10.2214/AJR.20.23313. Epub 2020 Oct 14. AJR Am J Roentgenol. 2020. PMID: 32755163 Free PMC article.
fastMRI: A Publicly Available Raw k-Space and DICOM Dataset of Knee Images for Accelerated MR Image Reconstruction Using Machine Learning.
Knoll F, Zbontar J, Sriram A, Muckley MJ, Bruno M, Defazio A, Parente M, Geras KJ, Katsnelson J, Chandarana H, Zhang Z, Drozdzalv M, Romero A, Rabbat M, Vincent P, Pinkerton J, Wang D, Yakubova N, Owens E, Zitnick CL, Recht MP, Sodickson DK, Lui YW. Knoll F, et al. Among authors: yakubova n. Radiol Artif Intell. 2020 Jan 29;2(1):e190007. doi: 10.1148/ryai.2020190007. Radiol Artif Intell. 2020. PMID: 32076662 Free PMC article.
Diabetic retinopathy is associated with bone marrow neuropathy and a depressed peripheral clock.
Busik JV, Tikhonenko M, Bhatwadekar A, Opreanu M, Yakubova N, Caballero S, Player D, Nakagawa T, Afzal A, Kielczewski J, Sochacki A, Hasty S, Li Calzi S, Kim S, Duclas SK, Segal MS, Guberski DL, Esselman WJ, Boulton ME, Grant MB. Busik JV, et al. Among authors: yakubova n. J Exp Med. 2009 Dec 21;206(13):2897-906. doi: 10.1084/jem.20090889. Epub 2009 Nov 23. J Exp Med. 2009. PMID: 19934019 Free PMC article.