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TF-Prioritizer: a Java pipeline to prioritize condition-specific transcription factors.
Gigascience. 2022 Dec 28;12:giad026. doi: 10.1093/gigascience/giad026. Epub 2023 May 3.
Gigascience. 2022.
PMID: 37132521
Free PMC article.
circRNA-sponging: a pipeline for extensive analysis of circRNA expression and their role in miRNA sponging.
Hoffmann M, Schwartz L, Ciora OA, Trummer N, Willruth LL, Jankowski J, Lee HK, Baumbach J, Furth PA, Hennighausen L, List M.
Hoffmann M, et al. Among authors: willruth ll.
Bioinform Adv. 2023 Jul 8;3(1):vbad093. doi: 10.1093/bioadv/vbad093. eCollection 2023.
Bioinform Adv. 2023.
PMID: 37485422
Free PMC article.
Item in Clipboard
Comprehensive benchmark of differential transcript usage analysis for static and dynamic conditions.
Lio CT, Düz T, Hoffmann M, Willruth LL, Baumbach J, List M, Tsoy O.
Lio CT, et al. Among authors: willruth ll.
bioRxiv [Preprint]. 2024 Jan 15:2024.01.14.575548. doi: 10.1101/2024.01.14.575548.
bioRxiv. 2024.
PMID: 38313260
Free PMC article.
Preprint.
Item in Clipboard
Blood transcriptomics analysis offers insights into variant-specific immune response to SARS-CoV-2.
Hoffmann M, Willruth LL, Dietrich A, Lee HK, Knabl L, Trummer N, Baumbach J, Furth PA, Hennighausen L, List M.
Hoffmann M, et al. Among authors: willruth ll.
Sci Rep. 2024 Feb 2;14(1):2808. doi: 10.1038/s41598-024-53117-w.
Sci Rep. 2024.
PMID: 38307916
Free PMC article.
Item in Clipboard
Blood transcriptomics analysis offers insights into variant-specific immune response to SARS-CoV-2.
Hoffmann M, Willruth LL, Dietrich A, Lee HK, Knabl L, Trummer N, Baumbach J, Furth PA, Hennighausen L, List M.
Hoffmann M, et al. Among authors: willruth ll.
bioRxiv [Preprint]. 2023 Nov 6:2023.11.03.564190. doi: 10.1101/2023.11.03.564190.
bioRxiv. 2023.
PMID: 38076885
Free PMC article.
Updated.
Preprint.
Item in Clipboard
circRNA-sponging: a pipeline for extensive analysis of circRNA expression and their role in miRNA sponging.
Hoffmann M, Schwartz L, Ciora OA, Trummer N, Willruth LL, Jankowski J, Lee HK, Baumbach J, Furth P, Hennighausen L, List M.
Hoffmann M, et al. Among authors: willruth ll.
bioRxiv [Preprint]. 2023 Jun 23:2023.01.19.524495. doi: 10.1101/2023.01.19.524495.
bioRxiv. 2023.
PMID: 36789427
Free PMC article.
Updated.
Preprint.
Item in Clipboard
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