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SigPrimedNet: A Signaling-Informed Neural Network for scRNA-seq Annotation of Known and Unknown Cell Types.
Biology (Basel). 2023 Apr 10;12(4):579. doi: 10.3390/biology12040579.
Biology (Basel). 2023.
PMID: 37106779
Free PMC article.
Integrating pathway knowledge with deep neural networks to reduce the dimensionality in single-cell RNA-seq data.
Gundogdu P, Loucera C, Alamo-Alvarez I, Dopazo J, Nepomuceno I.
Gundogdu P, et al.
BioData Min. 2022 Jan 3;15(1):1. doi: 10.1186/s13040-021-00285-4.
BioData Min. 2022.
PMID: 34980200
Free PMC article.
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Cell-to-cell and type-to-type heterogeneity of signaling networks: insights from the crowd.
Gabor A, Tognetti M, Driessen A, Tanevski J, Guo B, Cao W, Shen H, Yu T, Chung V; Single Cell Signaling in Breast Cancer DREAM Consortium members; Bodenmiller B, Saez-Rodriguez J.
Gabor A, et al.
Mol Syst Biol. 2021 Oct;17(10):e10402. doi: 10.15252/msb.202110402.
Mol Syst Biol. 2021.
PMID: 34661974
Free PMC article.
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