Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

Filters

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

Search Results

244 results

Filters applied: . Clear all
Results are displayed in a computed author sort order. The Results By Year timeline is not available.
Page 1
Sequence-structure-function relationships in the microbial protein universe.
Koehler Leman J, Szczerbiak P, Renfrew PD, Gligorijevic V, Berenberg D, Vatanen T, Taylor BC, Chandler C, Janssen S, Pataki A, Carriero N, Fisk I, Xavier RJ, Knight R, Bonneau R, Kosciolek T. Koehler Leman J, et al. Among authors: fisk i. Nat Commun. 2023 Apr 26;14(1):2351. doi: 10.1038/s41467-023-37896-w. Nat Commun. 2023. PMID: 37100781 Free PMC article.
Structure-based protein function prediction using graph convolutional networks.
Gligorijević V, Renfrew PD, Kosciolek T, Leman JK, Berenberg D, Vatanen T, Chandler C, Taylor BC, Fisk IM, Vlamakis H, Xavier RJ, Knight R, Cho K, Bonneau R. Gligorijević V, et al. Nat Commun. 2021 May 26;12(1):3168. doi: 10.1038/s41467-021-23303-9. Nat Commun. 2021. PMID: 34039967 Free PMC article.
OpenProteinSet: Training data for structural biology at scale.
Ahdritz G, Bouatta N, Kadyan S, Jarosch L, Berenberg D, Fisk I, Watkins AM, Ra S, Bonneau R, AlQuraishi M. Ahdritz G, et al. Among authors: fisk i. ArXiv [Preprint]. 2023 Aug 10:arXiv:2308.05326v1. ArXiv. 2023. PMID: 37608940 Free PMC article. Preprint.
OpenFold: retraining AlphaFold2 yields new insights into its learning mechanisms and capacity for generalization.
Ahdritz G, Bouatta N, Floristean C, Kadyan S, Xia Q, Gerecke W, O'Donnell TJ, Berenberg D, Fisk I, Zanichelli N, Zhang B, Nowaczynski A, Wang B, Stepniewska-Dziubinska MM, Zhang S, Ojewole A, Guney ME, Biderman S, Watkins AM, Ra S, Lorenzo PR, Nivon L, Weitzner B, Ban YA, Chen S, Zhang M, Li C, Song SL, He Y, Sorger PK, Mostaque E, Zhang Z, Bonneau R, AlQuraishi M. Ahdritz G, et al. Among authors: fisk i. Nat Methods. 2024 May 14. doi: 10.1038/s41592-024-02272-z. Online ahead of print. Nat Methods. 2024. PMID: 38744917
Digital Twins in Agriculture: Orchestration and Applications.
Escribà-Gelonch M, Liang S, van Schalkwyk P, Fisk I, Long NVD, Hessel V. Escribà-Gelonch M, et al. Among authors: fisk i. J Agric Food Chem. 2024 May 15;72(19):10737-10752. doi: 10.1021/acs.jafc.4c01934. Epub 2024 May 6. J Agric Food Chem. 2024. PMID: 38709011 Free PMC article. Review.
The role of plant vasculature in tackling N2O emissions.
Safdar LB, Fisk ID, Foulkes MJ. Safdar LB, et al. Among authors: fisk id. Trends Plant Sci. 2023 Dec;28(12):1354-1356. doi: 10.1016/j.tplants.2023.09.012. Epub 2023 Oct 13. Trends Plant Sci. 2023. PMID: 37839925
Challenges facing sustainable protein production: Opportunities for cereals.
Safdar LB, Foulkes MJ, Kleiner FH, Searle IR, Bhosale RA, Fisk ID, Boden SA. Safdar LB, et al. Among authors: fisk id. Plant Commun. 2023 Nov 13;4(6):100716. doi: 10.1016/j.xplc.2023.100716. Epub 2023 Sep 14. Plant Commun. 2023. PMID: 37710958 Free PMC article. Review.
244 results