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Widespread variation in molecular interactions and regulatory properties among transcription factor isoforms.
Lambourne L, Mattioli K, Santoso C, Sheynkman G, Inukai S, Kaundal B, Berenson A, Spirohn-Fitzgerald K, Bhattacharjee A, Rothman E, Shrestha S, Laval F, Yang Z, Bisht D, Sewell JA, Li G, Prasad A, Phanor S, Lane R, Campbell DM, Hunt T, Balcha D, Gebbia M, Twizere JC, Hao T, Frankish A, Riback JA, Salomonis N, Calderwood MA, Hill DE, Sahni N, Vidal M, Bulyk ML, Fuxman Bass JI. Lambourne L, et al. Among authors: fuxman bass ji. bioRxiv [Preprint]. 2024 Apr 10:2024.03.12.584681. doi: 10.1101/2024.03.12.584681. bioRxiv. 2024. PMID: 38617209 Free PMC article. Preprint.
A large-scale cancer-specific protein-DNA interaction network.
Lu Y, Berenson A, Lane R, Guelin I, Li Z, Chen Y, Shah S, Yin M, Soto-Ugaldi LF, Fiszbein A, Fuxman Bass JI. Lu Y, et al. Among authors: fuxman bass ji. bioRxiv [Preprint]. 2024 Jan 29:2024.01.24.577099. doi: 10.1101/2024.01.24.577099. bioRxiv. 2024. PMID: 38352498 Free PMC article. Preprint.
Emerging questions in transcriptional regulation.
Nora EP, Aerts S, Wittkopp PJ, Bussemaker HJ, Bulyk M, Sinha S, Zeitlinger J, Crocker J, Fuxman Bass JI. Nora EP, et al. Among authors: fuxman bass ji. Cell Syst. 2023 Apr 19;14(4):247-251. doi: 10.1016/j.cels.2023.03.005. Cell Syst. 2023. PMID: 37080160 Free article.
Widespread perturbation of ETS factor binding sites in cancer.
Carrasco Pro S, Hook H, Bray D, Berenzy D, Moyer D, Yin M, Labadorf AT, Tewhey R, Siggers T, Fuxman Bass JI. Carrasco Pro S, et al. Among authors: fuxman bass ji. Nat Commun. 2023 Feb 17;14(1):913. doi: 10.1038/s41467-023-36535-8. Nat Commun. 2023. PMID: 36808133 Free PMC article.
Intragenic proviral elements support transcription of defective HIV-1 proviruses.
Kuniholm J, Armstrong E, Bernabe B, Coote C, Berenson A, Patalano SD, Olson A, He X, Lin NH, Fuxman Bass JI, Henderson AJ. Kuniholm J, et al. Among authors: fuxman bass ji. PLoS Pathog. 2021 Dec 28;17(12):e1009982. doi: 10.1371/journal.ppat.1009982. eCollection 2021 Dec. PLoS Pathog. 2021. PMID: 34962974 Free PMC article.
45 results