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Using the Reactome Database.
Rothfels K, Milacic M, Matthews L, Haw R, Sevilla C, Gillespie M, Stephan R, Gong C, Ragueneau E, May B, Shamovsky V, Wright A, Weiser J, Beavers D, Conley P, Tiwari K, Jassal B, Griss J, Senff-Ribeiro A, Brunson T, Petryszak R, Hermjakob H, D'Eustachio P, Wu G, Stein L. Rothfels K, et al. Among authors: beavers d, d eustachio p. Curr Protoc. 2023 Apr;3(4):e722. doi: 10.1002/cpz1.722. Curr Protoc. 2023. PMID: 37053306
Illuminating Dark Proteins using Reactome Pathways.
Brunson T, Sanati N, Matthews L, Haw R, Beavers D, Shorser S, Sevilla C, Viteri G, Conley P, Rothfels K, Hermjakob H, Stein L, D'Eustachio P, Wu G. Brunson T, et al. Among authors: beavers d, d eustachio p. bioRxiv [Preprint]. 2023 Jun 5:2023.06.05.543335. doi: 10.1101/2023.06.05.543335. bioRxiv. 2023. PMID: 37333417 Free PMC article. Preprint.
Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes.
Orlic-Milacic M, Rothfels K, Matthews L, Wright A, Jassal B, Shamovsky V, Trinh Q, Gillespie M, Sevilla C, Tiwari K, Ragueneau E, Gong C, Stephan R, May B, Haw R, Weiser J, Beavers D, Conley P, Hermjakob H, Stein LD, D'Eustachio P, Wu G. Orlic-Milacic M, et al. Among authors: beavers d. bioRxiv [Preprint]. 2023 Oct 21:2023.10.18.562964. doi: 10.1101/2023.10.18.562964. bioRxiv. 2023. PMID: 37904913 Free PMC article. Updated. Preprint.
The Reactome Pathway Knowledgebase 2024.
Milacic M, Beavers D, Conley P, Gong C, Gillespie M, Griss J, Haw R, Jassal B, Matthews L, May B, Petryszak R, Ragueneau E, Rothfels K, Sevilla C, Shamovsky V, Stephan R, Tiwari K, Varusai T, Weiser J, Wright A, Wu G, Stein L, Hermjakob H, D'Eustachio P. Milacic M, et al. Among authors: beavers d. Nucleic Acids Res. 2024 Jan 5;52(D1):D672-D678. doi: 10.1093/nar/gkad1025. Nucleic Acids Res. 2024. PMID: 37941124 Free PMC article.
Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes.
Orlic-Milacic M, Rothfels K, Matthews L, Wright A, Jassal B, Shamovsky V, Trinh Q, Gillespie ME, Sevilla C, Tiwari K, Ragueneau E, Gong C, Stephan R, May B, Haw R, Weiser J, Beavers D, Conley P, Hermjakob H, Stein LD, D'Eustachio P, Wu G. Orlic-Milacic M, et al. Among authors: beavers d. Database (Oxford). 2024 May 7;2024:baae031. doi: 10.1093/database/baae031. Database (Oxford). 2024. PMID: 38713862 Free article.
The osteoarthritis prevention study (TOPS) - A randomized controlled trial of diet and exercise to prevent Knee Osteoarthritis: Design and rationale.
Messier SP, Callahan LF, Losina E, Mihalko SL, Guermazi A, Ip E, Miller GD, Katz JN, Loeser RF, Pietrosimone BG, Soto S, Cook JL, Newman JJ, DeVita P, Spindler KP, Runhaar J, Armitano-Lago C, Duong V, Selzer F, Hill R, Love M, Beavers DP, Saldana S, Stoker AM, Rice PE, Hunter DJ. Messier SP, et al. Among authors: beavers dp. Osteoarthr Cartil Open. 2023 Nov 20;6(1):100418. doi: 10.1016/j.ocarto.2023.100418. eCollection 2024 Mar. Osteoarthr Cartil Open. 2023. PMID: 38144515 Free PMC article.
Association between late-life air pollution exposure and medial temporal lobe atrophy in older women.
Wang X, Salminen LE, Petkus AJ, Driscoll I, Millstein J, Beavers DP, Espeland MA, Erus G, Braskie MN, Thompson PM, Gatz M, Chui HC, Resnick SM, Kaufman JD, Rapp SR, Shumaker S, Brown M, Younan D, Chen JC. Wang X, et al. Among authors: beavers dp. medRxiv [Preprint]. 2023 Nov 29:2023.11.28.23298708. doi: 10.1101/2023.11.28.23298708. medRxiv. 2023. PMID: 38077091 Free PMC article. Preprint.
Alzheimer's Related Neurodegeneration Mediates Air Pollution Effects on Medial Temporal Lobe Atrophy.
Petkus AJ, Salminen LE, Wang X, Driscoll I, Millstein J, Beavers DP, Espeland MA, Braskie MN, Thompson PM, Casanova R, Gatz M, Chui HC, Resnick SM, Kaufman JD, Rapp SR, Shumaker S, Younan D, Chen JC. Petkus AJ, et al. Among authors: beavers dp. medRxiv [Preprint]. 2023 Nov 29:2023.11.29.23299144. doi: 10.1101/2023.11.29.23299144. medRxiv. 2023. PMID: 38076972 Free PMC article. Preprint.
Clinical, Health-Related Quality of Life, and Gait Differences Among Obesity Classes in Adults With Knee Osteoarthritis.
Messier SP, Gill ME, Mihalko SL, Beavers DP, Queen K, Miller GD, Losina E, Katz JN, Loeser RF, DeVita P, Hunter DJ, Quandt SA, Lyles MF, Hudson D, Callahan LF. Messier SP, et al. Among authors: beavers dp. Arthritis Care Res (Hoboken). 2024 Apr;76(4):503-510. doi: 10.1002/acr.25265. Epub 2024 Jan 16. Arthritis Care Res (Hoboken). 2024. PMID: 37885103
173 results