Lee HJ - Search Results

1

Uropathogenic Escherichia coli infection-induced epithelial trained immunity impacts urinary tract disease outcome.

Russell SK, Harrison JK, Olson BS, Lee HJ, O'Brien VP, Xing X, Livny J, Yu L, Roberson EDO, Bomjan R, Fan C, Sha M, Estfanous S, Amer AO, Colonna M, Stappenbeck TS, Wang T, Hannan TJ, Hultgren SJ. Russell SK, et al. Among authors: lee hj. Nat Microbiol. 2023 May;8(5):875-888. doi: 10.1038/s41564-023-01346-6. Epub 2023 Apr 10. Nat Microbiol. 2023. PMID: 37037942 Free PMC article.

2

Whole-genome profiling of DNA methylation and hydroxymethylation identifies distinct regulatory programs among innate lymphocytes.

Peng V, Xing X, Bando JK, Trsan T, Di Luccia B, Collins PL, Li D, Wang WL, Lee HJ, Oltz EM, Wang T, Colonna M. Peng V, et al. Among authors: lee hj. Nat Immunol. 2022 Apr;23(4):619-631. doi: 10.1038/s41590-022-01164-8. Epub 2022 Mar 24. Nat Immunol. 2022. PMID: 35332328 Free PMC article.

3

A map of cis-regulatory elements and 3D genome structures in zebrafish.

Yang H, Luan Y, Liu T, Lee HJ, Fang L, Wang Y, Wang X, Zhang B, Jin Q, Ang KC, Xing X, Wang J, Xu J, Song F, Sriranga I, Khunsriraksakul C, Salameh T, Li D, Choudhary MNK, Topczewski J, Wang K, Gerhard GS, Hardison RC, Wang T, Cheng KC, Yue F. Yang H, et al. Among authors: lee hj. Nature. 2020 Dec;588(7837):337-343. doi: 10.1038/s41586-020-2962-9. Epub 2020 Nov 25. Nature. 2020. PMID: 33239788 Free PMC article.

4

Capture Methylation-Sensitive Restriction Enzyme Sequencing (Capture MRE-Seq) for Methylation Analysis of Highly Degraded DNA Samples.

Xing X, Karlow JA, Li D, Jang HS, Lee HJ, Wang T. Xing X, et al. Among authors: lee hj. Methods Mol Biol. 2023;2621:73-89. doi: 10.1007/978-1-0716-2950-5_6. Methods Mol Biol. 2023. PMID: 37041441

5

Epigenetic dynamics shaping melanophore and iridophore cell fate in zebrafish.

Jang HS, Chen Y, Ge J, Wilkening AN, Hou Y, Lee HJ, Choi YR, Lowdon RF, Xing X, Li D, Kaufman CK, Johnson SL, Wang T. Jang HS, et al. Among authors: lee hj. Genome Biol. 2021 Oct 4;22(1):282. doi: 10.1186/s13059-021-02493-x. Genome Biol. 2021. PMID: 34607603 Free PMC article.

6

DNA hypomethylation within specific transposable element families associates with tissue-specific enhancer landscape.

Xie M, Hong C, Zhang B, Lowdon RF, Xing X, Li D, Zhou X, Lee HJ, Maire CL, Ligon KL, Gascard P, Sigaroudinia M, Tlsty TD, Kadlecek T, Weiss A, O'Geen H, Farnham PJ, Madden PA, Mungall AJ, Tam A, Kamoh B, Cho S, Moore R, Hirst M, Marra MA, Costello JF, Wang T. Xie M, et al. Among authors: lee hj. Nat Genet. 2013 Jul;45(7):836-41. doi: 10.1038/ng.2649. Epub 2013 May 26. Nat Genet. 2013. PMID: 23708189 Free PMC article.

7

Tissue-specific DNA methylation is conserved across human, mouse, and rat, and driven by primary sequence conservation.

Zhou J, Sears RL, Xing X, Zhang B, Li D, Rockweiler NB, Jang HS, Choudhary MNK, Lee HJ, Lowdon RF, Arand J, Tabers B, Gu CC, Cicero TJ, Wang T. Zhou J, et al. Among authors: lee hj. BMC Genomics. 2017 Sep 12;18(1):724. doi: 10.1186/s12864-017-4115-6. BMC Genomics. 2017. PMID: 28899353 Free PMC article.

8

Developmental enhancers revealed by extensive DNA methylome maps of zebrafish early embryos.

Lee HJ, Lowdon RF, Maricque B, Zhang B, Stevens M, Li D, Johnson SL, Wang T. Lee HJ, et al. Nat Commun. 2015 Feb 20;6:6315. doi: 10.1038/ncomms7315. Nat Commun. 2015. PMID: 25697895 Free PMC article.

9

Requisite Chromatin Remodeling for Myeloid and Erythroid Lineage Differentiation from Erythromyeloid Progenitors.

Wu J, Krchma K, Lee HJ, Prabhakar S, Wang X, Zhao H, Xing X, Seong RH, Fremont DH, Artyomov MN, Wang T, Choi K. Wu J, et al. Among authors: lee hj. Cell Rep. 2020 Nov 17;33(7):108395. doi: 10.1016/j.celrep.2020.108395. Cell Rep. 2020. PMID: 33207205 Free PMC article.

10

MicroRNAs Induce a Permissive Chromatin Environment that Enables Neuronal Subtype-Specific Reprogramming of Adult Human Fibroblasts.

Abernathy DG, Kim WK, McCoy MJ, Lake AM, Ouwenga R, Lee SW, Xing X, Li D, Lee HJ, Heuckeroth RO, Dougherty JD, Wang T, Yoo AS. Abernathy DG, et al. Among authors: lee sw, lee hj. Cell Stem Cell. 2017 Sep 7;21(3):332-348.e9. doi: 10.1016/j.stem.2017.08.002. Cell Stem Cell. 2017. PMID: 28886366 Free PMC article.

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