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Page 1
Comparing variability in diagnosis of upper respiratory tract infections in patients using syndromic, next generation sequencing, and PCR-based methods.
Bartlow AW, Stromberg ZR, Gleasner CD, Hu B, Davenport KW, Jakhar S, Li PE, Vosburg M, Garimella M, Chain PSG, Erkkila TH, Fair JM, Mukundan H. Bartlow AW, et al. Among authors: erkkila th. PLOS Glob Public Health. 2022 Jul 20;2(7):e0000811. doi: 10.1371/journal.pgph.0000811. eCollection 2022. PLOS Glob Public Health. 2022. PMID: 36962439 Free PMC article.
Genomic comparison of Escherichia coli O104:H4 isolates from 2009 and 2011 reveals plasmid, and prophage heterogeneity, including shiga toxin encoding phage stx2.
Ahmed SA, Awosika J, Baldwin C, Bishop-Lilly KA, Biswas B, Broomall S, Chain PS, Chertkov O, Chokoshvili O, Coyne S, Davenport K, Detter JC, Dorman W, Erkkila TH, Folster JP, Frey KG, George M, Gleasner C, Henry M, Hill KK, Hubbard K, Insalaco J, Johnson S, Kitzmiller A, Krepps M, Lo CC, Luu T, McNew LA, Minogue T, Munk CA, Osborne B, Patel M, Reitenga KG, Rosenzweig CN, Shea A, Shen X, Strockbine N, Tarr C, Teshima H, van Gieson E, Verratti K, Wolcott M, Xie G, Sozhamannan S, Gibbons HS; Threat Characterization Consortium. Ahmed SA, et al. Among authors: erkkila th. PLoS One. 2012;7(11):e48228. doi: 10.1371/journal.pone.0048228. Epub 2012 Nov 1. PLoS One. 2012. PMID: 23133618 Free PMC article.
Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI943.
Reeve W, Drew E, Ballard R, Melino V, Tian R, De Meyer S, Brau L, Ninawi M, Daligault H, Davenport K, Erkkila T, Goodwin L, Gu W, Munk C, Teshima H, Xu Y, Chain P, Kyrpides N. Reeve W, et al. Stand Genomic Sci. 2013 Dec 15;9(2):232-42. doi: 10.4056/sigs.4478252. eCollection 2013 Dec 20. Stand Genomic Sci. 2013. PMID: 24976880 Free PMC article.
High-Quality Draft Genome Sequences of Four Lignocellulose-Degrading Bacteria Isolated from Puerto Rican Forest Soil: Gordonia sp., Paenibacillus sp., Variovorax sp., and Vogesella sp.
Woo HL, DeAngelis KM, Teshima H, Davenport K, Daligault H, Erkkila T, Goodwin L, Gu W, Lo CC, Munk C, Scholz M, Xu Y, Chain P, Bruce D, Detter C, Tapia R, Han C, Simmons BA, Hazen TC. Woo HL, et al. Genome Announc. 2017 May 4;5(18):e00300-17. doi: 10.1128/genomeA.00300-17. Genome Announc. 2017. PMID: 28473393 Free PMC article.
Genome sequence of the Leisingera aquimarina type strain (DSM 24565(T)), a member of the marine Roseobacter clade rich in extrachromosomal elements.
Riedel T, Teshima H, Petersen J, Fiebig A, Davenport K, Daligault H, Erkkila T, Gu W, Munk C, Xu Y, Chen A, Pati A, Ivanova N, Goodwin LA, Chain P, Detter JC, Rohde M, Gronow S, Kyrpides NC, Woyke T, Göker M, Brinkhoff T, Klenk HP. Riedel T, et al. Stand Genomic Sci. 2013 Jul 30;8(3):389-402. doi: 10.4056/sigs.3858183. eCollection 2013 Jul 30. Stand Genomic Sci. 2013. PMID: 24501625 Free PMC article.
Non-contiguous finished genome sequence of plant-growth promoting Serratia proteamaculans S4.
Neupane S, Goodwin LA, Högberg N, Kyrpides NC, Alström S, Bruce D, Quintana B, Munk C, Daligault H, Teshima H, Davenport K, Reitenga K, Green L, Chain P, Erkkila T, Gu W, Zhang X, Xu Y, Kunde Y, Chertkov O, Han J, Han C, Detter JC, Ivanova N, Pati A, Chen A, Szeto E, Mavromatis K, Huntemann M, Nolan M, Pitluck S, Deshpande S, Markowitz V, Pagani I, Klenk HP, Woyke T, Finlay RD. Neupane S, et al. Stand Genomic Sci. 2013 Jul 30;8(3):441-9. doi: 10.4056/sigs.4027757. eCollection 2013 Jul 30. Stand Genomic Sci. 2013. PMID: 24501629 Free PMC article.
Genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain NZP2037.
Kelly S, Sullivan J, Ronson C, Tian R, Bräu L, Davenport K, Daligault H, Erkkila T, Goodwin L, Gu W, Munk C, Teshima H, Xu Y, Chain P, Woyke T, Liolios K, Pati A, Mavromatis K, Markowitz V, Ivanova N, Kyrpides N, Reeve W. Kelly S, et al. Stand Genomic Sci. 2014 Dec 8;9:7. doi: 10.1186/1944-3277-9-7. eCollection 2014. Stand Genomic Sci. 2014. PMID: 25780500 Free PMC article.
High-quality genome sequence of the radioresistant bacterium Deinococcus ficus KS 0460.
Matrosova VY, Gaidamakova EK, Makarova KS, Grichenko O, Klimenkova P, Volpe RP, Tkavc R, Ertem G, Conze IH, Brambilla E, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy T, Daum C, Shapiro N, Ivanova N, Kyrpides N, Woyke T, Daligault H, Davenport K, Erkkila T, Goodwin LA, Gu W, Munk C, Teshima H, Xu Y, Chain P, Woolbert M, Gunde-Cimerman N, Wolf YI, Grebenc T, Gostinčar C, Daly MJ. Matrosova VY, et al. Stand Genomic Sci. 2017 Jul 28;12:46. doi: 10.1186/s40793-017-0258-y. eCollection 2017. Stand Genomic Sci. 2017. PMID: 28775794 Free PMC article.
15 results