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Defining and benchmarking open problems in single-cell analysis.
Res Sq [Preprint]. 2024 Apr 4:rs.3.rs-4181617. doi: 10.21203/rs.3.rs-4181617/v1.
Res Sq. 2024.
PMID: 38645152
Free PMC article.
Preprint.
SIMBA: single-cell embedding along with features.
Chen H, Ryu J, Vinyard ME, Lerer A, Pinello L.
Chen H, et al. Among authors: vinyard me.
Nat Methods. 2023 May 29. doi: 10.1038/s41592-023-01899-8. Online ahead of print.
Nat Methods. 2023.
PMID: 37248389
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A molecular glue approach to control the half-life of CRISPR-based technologies.
Sreekanth V, Jan M, Zhao KT, Lim D, Davis JR, McConkey M, Kovalcik V, Barkal S, Law BK, Fife J, Tian R, Vinyard ME, Becerra B, Kampmann M, Sherwood RI, Pinello L, Liu DR, Ebert BL, Choudhary A.
Sreekanth V, et al. Among authors: vinyard me.
bioRxiv [Preprint]. 2023 Mar 20:2023.03.12.531757. doi: 10.1101/2023.03.12.531757.
bioRxiv. 2023.
PMID: 36945568
Free PMC article.
Preprint.
Item in Clipboard
singlecellVR: Interactive Visualization of Single-Cell Data in Virtual Reality.
Stein DF, Chen H, Vinyard ME, Qin Q, Combs RD, Zhang Q, Pinello L.
Stein DF, et al. Among authors: vinyard me.
Front Genet. 2021 Oct 28;12:764170. doi: 10.3389/fgene.2021.764170. eCollection 2021.
Front Genet. 2021.
PMID: 34777482
Free PMC article.
Item in Clipboard
Assessment of computational methods for the analysis of single-cell ATAC-seq data.
Chen H, Lareau C, Andreani T, Vinyard ME, Garcia SP, Clement K, Andrade-Navarro MA, Buenrostro JD, Pinello L.
Chen H, et al. Among authors: vinyard me.
Genome Biol. 2019 Nov 18;20(1):241. doi: 10.1186/s13059-019-1854-5.
Genome Biol. 2019.
PMID: 31739806
Free PMC article.
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CRISPR-suppressor scanning reveals a nonenzymatic role of LSD1 in AML.
Vinyard ME, Su C, Siegenfeld AP, Waterbury AL, Freedy AM, Gosavi PM, Park Y, Kwan EE, Senzer BD, Doench JG, Bauer DE, Pinello L, Liau BB.
Vinyard ME, et al.
Nat Chem Biol. 2019 May;15(5):529-539. doi: 10.1038/s41589-019-0263-0. Epub 2019 Apr 15.
Nat Chem Biol. 2019.
PMID: 30992567
Free PMC article.
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