Pinello L - Search Results

1

A molecular glue approach to control the half-life of CRISPR-based technologies.

Sreekanth V, Jan M, Zhao KT, Lim D, Davis JR, McConkey M, Kovalcik V, Barkal S, Law BK, Fife J, Tian R, Vinyard ME, Becerra B, Kampmann M, Sherwood RI, Pinello L, Liu DR, Ebert BL, Choudhary A. Sreekanth V, et al. Among authors: pinello l. bioRxiv [Preprint]. 2023 Mar 20:2023.03.12.531757. doi: 10.1101/2023.03.12.531757. bioRxiv. 2023. PMID: 36945568 Free PMC article. Preprint.

2

Genome-wide characterization of chromatin binding and nucleosome spacing activity of the nucleosome remodelling ATPase ISWI.

Sala A, Toto M, Pinello L, Gabriele A, Di Benedetto V, Ingrassia AM, Lo Bosco G, Di Gesù V, Giancarlo R, Corona DF. Sala A, et al. Among authors: pinello l. EMBO J. 2011 May 4;30(9):1766-77. doi: 10.1038/emboj.2011.98. Epub 2011 Mar 29. EMBO J. 2011. PMID: 21448136 Free PMC article.

3

A multi-layer method to study genome-scale positions of nucleosomes.

Di Gesù V, Lo Bosco G, Pinello L, Yuan GC, Corona DF. Di Gesù V, et al. Among authors: pinello l. Genomics. 2009 Feb;93(2):140-5. doi: 10.1016/j.ygeno.2008.09.012. Epub 2008 Nov 21. Genomics. 2009. PMID: 18951969 Free article.

4

Inferring gene expression from ribosomal promoter sequences, a crowdsourcing approach.

Meyer P, Siwo G, Zeevi D, Sharon E, Norel R; DREAM6 Promoter Prediction Consortium; Segal E, Stolovitzky G. Meyer P, et al. Genome Res. 2013 Nov;23(11):1928-37. doi: 10.1101/gr.157420.113. Epub 2013 Aug 15. Genome Res. 2013. PMID: 23950146 Free PMC article.

5

A methodology to assess the intrinsic discriminative ability of a distance function and its interplay with clustering algorithms for microarray data analysis.

Giancarlo R, Lo Bosco G, Pinello L, Utro F. Giancarlo R, et al. Among authors: pinello l. BMC Bioinformatics. 2013;14 Suppl 1(Suppl 1):S6. doi: 10.1186/1471-2105-14-S1-S6. Epub 2013 Jan 14. BMC Bioinformatics. 2013. PMID: 23369037 Free PMC article.

6

A motif-independent metric for DNA sequence specificity.

Pinello L, Lo Bosco G, Hanlon B, Yuan GC. Pinello L, et al. BMC Bioinformatics. 2011 Oct 21;12:408. doi: 10.1186/1471-2105-12-408. BMC Bioinformatics. 2011. PMID: 22017798 Free PMC article.

7

CRISPResso2 provides accurate and rapid genome editing sequence analysis.

Clement K, Rees H, Canver MC, Gehrke JM, Farouni R, Hsu JY, Cole MA, Liu DR, Joung JK, Bauer DE, Pinello L. Clement K, et al. Among authors: pinello l. Nat Biotechnol. 2019 Mar;37(3):224-226. doi: 10.1038/s41587-019-0032-3. Nat Biotechnol. 2019. PMID: 30809026 Free PMC article. No abstract available.

8

CRISPR-suppressor scanning reveals a nonenzymatic role of LSD1 in AML.

Vinyard ME, Su C, Siegenfeld AP, Waterbury AL, Freedy AM, Gosavi PM, Park Y, Kwan EE, Senzer BD, Doench JG, Bauer DE, Pinello L, Liau BB. Vinyard ME, et al. Among authors: pinello l. Nat Chem Biol. 2019 May;15(5):529-539. doi: 10.1038/s41589-019-0263-0. Epub 2019 Apr 15. Nat Chem Biol. 2019. PMID: 30992567 Free PMC article.

9

Assessment of computational methods for the analysis of single-cell ATAC-seq data.

Chen H, Lareau C, Andreani T, Vinyard ME, Garcia SP, Clement K, Andrade-Navarro MA, Buenrostro JD, Pinello L. Chen H, et al. Among authors: pinello l. Genome Biol. 2019 Nov 18;20(1):241. doi: 10.1186/s13059-019-1854-5. Genome Biol. 2019. PMID: 31739806 Free PMC article.

10

PrimeDesign software for rapid and simplified design of prime editing guide RNAs.

Hsu JY, Grünewald J, Szalay R, Shih J, Anzalone AV, Lam KC, Shen MW, Petri K, Liu DR, Joung JK, Pinello L. Hsu JY, et al. Among authors: pinello l. Nat Commun. 2021 Feb 15;12(1):1034. doi: 10.1038/s41467-021-21337-7. Nat Commun. 2021. PMID: 33589617 Free PMC article.

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