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A deep population reference panel of tandem repeat variation.
Jam HZ, Li Y, DeVito R, Mousavi N, Ma N, Lujumba I, Adam Y, Maksimov M, Huang B, Dolzhenko E, Qiu Y, Kakembo FE, Joseph H, Onyido B, Adeyemi J, Bakhtiari M, Park J, Javadzadeh S, Jjingo D, Adebiyi E, Bafna V, Gymrek M. Jam HZ, et al. Among authors: bafna v. bioRxiv [Preprint]. 2023 Mar 12:2023.03.09.531600. doi: 10.1101/2023.03.09.531600. bioRxiv. 2023. PMID: 36945429 Free PMC article. Updated. Preprint.
Identifying the favored mutation in a positive selective sweep.
Akbari A, Vitti JJ, Iranmehr A, Bakhtiari M, Sabeti PC, Mirarab S, Bafna V. Akbari A, et al. Among authors: bafna v. Nat Methods. 2018 Apr;15(4):279-282. doi: 10.1038/nmeth.4606. Epub 2018 Feb 19. Nat Methods. 2018. PMID: 29457793 Free PMC article.
Targeted genotyping of variable number tandem repeats with adVNTR.
Bakhtiari M, Shleizer-Burko S, Gymrek M, Bansal V, Bafna V. Bakhtiari M, et al. Among authors: bafna v. Genome Res. 2018 Nov;28(11):1709-1719. doi: 10.1101/gr.235119.118. Epub 2018 Oct 23. Genome Res. 2018. PMID: 30352806 Free PMC article.
Variable number tandem repeats mediate the expression of proximal genes.
Bakhtiari M, Park J, Ding YC, Shleizer-Burko S, Neuhausen SL, Halldórsson BV, Stefánsson K, Gymrek M, Bafna V. Bakhtiari M, et al. Among authors: bafna v. Nat Commun. 2021 Apr 6;12(1):2075. doi: 10.1038/s41467-021-22206-z. Nat Commun. 2021. PMID: 33824302 Free PMC article.
FastViFi: Fast and accurate detection of (Hybrid) Viral DNA and RNA.
Javadzadeh S, Rajkumar U, Nguyen N, Sarmashghi S, Luebeck J, Shang J, Bafna V. Javadzadeh S, et al. Among authors: bafna v. NAR Genom Bioinform. 2022 Apr 26;4(2):lqac032. doi: 10.1093/nargab/lqac032. eCollection 2022 Jun. NAR Genom Bioinform. 2022. PMID: 35493723 Free PMC article.
A deep population reference panel of tandem repeat variation.
Ziaei Jam H, Li Y, DeVito R, Mousavi N, Ma N, Lujumba I, Adam Y, Maksimov M, Huang B, Dolzhenko E, Qiu Y, Kakembo FE, Joseph H, Onyido B, Adeyemi J, Bakhtiari M, Park J, Javadzadeh S, Jjingo D, Adebiyi E, Bafna V, Gymrek M. Ziaei Jam H, et al. Among authors: bafna v. Nat Commun. 2023 Oct 23;14(1):6711. doi: 10.1038/s41467-023-42278-3. Nat Commun. 2023. PMID: 37872149 Free PMC article.
193 results