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Targeted Phasing of 2-200 Kilobase DNA Fragments with a Short-Read Sequencer and a Single-Tube Linked-Read Library Method.
Mikhaylova V, Rzepka M, Kawamura T, Xia Y, Chang PL, Zhou S, Pham L, Modi N, Yao L, Perez-Agustin A, Pagans S, Boles TC, Lei M, Wang Y, Garcia-Bassets I, Chen Z. Mikhaylova V, et al. Among authors: garcia bassets i. bioRxiv [Preprint]. 2023 Mar 6:2023.03.05.531179. doi: 10.1101/2023.03.05.531179. bioRxiv. 2023. PMID: 36945366 Free PMC article. Updated. Preprint.
Targeted phasing of 2-200 kilobase DNA fragments with a short-read sequencer and a single-tube linked-read library method.
Mikhaylova V, Rzepka M, Kawamura T, Xia Y, Chang PL, Zhou S, Paasch A, Pham L, Modi N, Yao L, Perez-Agustin A, Pagans S, Boles TC, Lei M, Wang Y, Garcia-Bassets I, Chen Z. Mikhaylova V, et al. Among authors: garcia bassets i. Sci Rep. 2024 Apr 5;14(1):7988. doi: 10.1038/s41598-024-58733-0. Sci Rep. 2024. PMID: 38580715 Free PMC article.
Enhancer release and retargeting activates disease-susceptibility genes.
Oh S, Shao J, Mitra J, Xiong F, D'Antonio M, Wang R, Garcia-Bassets I, Ma Q, Zhu X, Lee JH, Nair SJ, Yang F, Ohgi K, Frazer KA, Zhang ZD, Li W, Rosenfeld MG. Oh S, et al. Among authors: garcia bassets i. Nature. 2021 Jul;595(7869):735-740. doi: 10.1038/s41586-021-03577-1. Epub 2021 May 26. Nature. 2021. PMID: 34040254
Analysis of Brugada syndrome loci reveals that fine-mapping clustered GWAS hits enhances the annotation of disease-relevant variants.
Pinsach-Abuin ML, Del Olmo B, Pérez-Agustin A, Mates J, Allegue C, Iglesias A, Ma Q, Merkurjev D, Konovalov S, Zhang J, Sheikh F, Telenti A, Brugada J, Brugada R, Gymrek M, di Iulio J, Garcia-Bassets I, Pagans S. Pinsach-Abuin ML, et al. Among authors: garcia bassets i. Cell Rep Med. 2021 Apr 20;2(4):100250. doi: 10.1016/j.xcrm.2021.100250. eCollection 2021 Apr 20. Cell Rep Med. 2021. PMID: 33948580 Free PMC article.
Tissue-specific transcription reprogramming promotes liver metastasis of colorectal cancer.
Teng S, Li YE, Yang M, Qi R, Huang Y, Wang Q, Zhang Y, Chen S, Li S, Lin K, Cao Y, Ji Q, Gu Q, Cheng Y, Chang Z, Guo W, Wang P, Garcia-Bassets I, Lu ZJ, Wang D. Teng S, et al. Among authors: garcia bassets i. Cell Res. 2020 Jan;30(1):34-49. doi: 10.1038/s41422-019-0259-z. Epub 2019 Dec 6. Cell Res. 2020. PMID: 31811277 Free PMC article.
Chromatin establishes an immature version of neuronal protocadherin selection during the naive-to-primed conversion of pluripotent stem cells.
Almenar-Queralt A, Merkurjev D, Kim HS, Navarro M, Ma Q, Chaves RS, Allegue C, Driscoll SP, Chen AG, Kohlnhofer B, Fong LK, Woodruff G, Mackintosh C, Bohaciakova D, Hruska-Plochan M, Tadokoro T, Young JE, El Hajj N, Dittrich M, Marsala M, Goldstein LSB, Garcia-Bassets I. Almenar-Queralt A, et al. Among authors: garcia bassets i. Nat Genet. 2019 Dec;51(12):1691-1701. doi: 10.1038/s41588-019-0526-4. Epub 2019 Nov 18. Nat Genet. 2019. PMID: 31740836 Free PMC article.
Transcriptional regulation of the sodium channel gene (SCN5A) by GATA4 in human heart.
Tarradas A, Pinsach-Abuin ML, Mackintosh C, Llorà-Batlle O, Pérez-Serra A, Batlle M, Pérez-Villa F, Zimmer T, Garcia-Bassets I, Brugada R, Beltran-Alvarez P, Pagans S. Tarradas A, et al. Among authors: garcia bassets i. J Mol Cell Cardiol. 2017 Jan;102:74-82. doi: 10.1016/j.yjmcc.2016.10.013. Epub 2016 Nov 26. J Mol Cell Cardiol. 2017. PMID: 27894866 Free article.
32 results