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Promise of bile circulating tumor DNA in biliary tract cancers.
Kearney JF, Weighill D, Yeh JJ. Kearney JF, et al. Among authors: weighill d. Cancer. 2023 Jun 1;129(11):1643-1645. doi: 10.1002/cncr.34715. Epub 2023 Mar 18. Cancer. 2023. PMID: 36932988 Free PMC article. No abstract available.
The Network Zoo: a multilingual package for the inference and analysis of gene regulatory networks.
Ben Guebila M, Wang T, Lopes-Ramos CM, Fanfani V, Weighill D, Burkholz R, Schlauch D, Paulson JN, Altenbuchinger M, Shutta KH, Sonawane AR, Lim J, Calderer G, van IJzendoorn DGP, Morgan D, Marin A, Chen CY, Song Q, Saha E, DeMeo DL, Padi M, Platig J, Kuijjer ML, Glass K, Quackenbush J. Ben Guebila M, et al. Among authors: weighill d. Genome Biol. 2023 Mar 9;24(1):45. doi: 10.1186/s13059-023-02877-1. Genome Biol. 2023. PMID: 36894939 Free PMC article.
An online notebook resource for reproducible inference, analysis and publication of gene regulatory networks.
Ben Guebila M, Weighill D, Lopes-Ramos CM, Burkholz R, Pop RT, Palepu K, Shapoval M, Fagny M, Schlauch D, Glass K, Altenbuchinger M, Kuijjer ML, Platig J, Quackenbush J. Ben Guebila M, et al. Among authors: weighill d. Nat Methods. 2022 May;19(5):511-513. doi: 10.1038/s41592-022-01479-2. Nat Methods. 2022. PMID: 35459940 Free PMC article. No abstract available.
Predicting genotype-specific gene regulatory networks.
Weighill D, Ben Guebila M, Glass K, Quackenbush J, Platig J. Weighill D, et al. Genome Res. 2022 Mar;32(3):524-533. doi: 10.1101/gr.275107.120. Epub 2022 Feb 22. Genome Res. 2022. PMID: 35193937 Free PMC article.
Gene regulatory network inference as relaxed graph matching.
Weighill D, Guebila MB, Lopes-Ramos C, Glass K, Quackenbush J, Platig J, Burkholz R. Weighill D, et al. Proc AAAI Conf Artif Intell. 2021 Feb;35(11):10263-10272. Epub 2021 May 18. Proc AAAI Conf Artif Intell. 2021. PMID: 34707916 Free PMC article.
GRAND: a database of gene regulatory network models across human conditions.
Ben Guebila M, Lopes-Ramos CM, Weighill D, Sonawane AR, Burkholz R, Shamsaei B, Platig J, Glass K, Kuijjer ML, Quackenbush J. Ben Guebila M, et al. Among authors: weighill d. Nucleic Acids Res. 2022 Jan 7;50(D1):D610-D621. doi: 10.1093/nar/gkab778. Nucleic Acids Res. 2022. PMID: 34508353 Free PMC article.
Gene Targeting in Disease Networks.
Weighill D, Ben Guebila M, Glass K, Platig J, Yeh JJ, Quackenbush J. Weighill D, et al. Front Genet. 2021 Apr 23;12:649942. doi: 10.3389/fgene.2021.649942. eCollection 2021. Front Genet. 2021. PMID: 33968133 Free PMC article.
Network Modeling of Complex Data Sets.
Jones P, Weighill D, Shah M, Climer S, Schmutz J, Sreedasyam A, Tuskan G, Jacobson D. Jones P, et al. Among authors: weighill d. Methods Mol Biol. 2020;2096:197-215. doi: 10.1007/978-1-0716-0195-2_15. Methods Mol Biol. 2020. PMID: 32720156 Free PMC article.
24 results