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Emergence and pandemic spread of small ruminant lentiviruses.
Carrozza ML, Niewiadomska AM, Mazzei M, Abi-Said MR, Hué S, Hughes J, Gatseva A, Gifford RJ. Carrozza ML, et al. Among authors: hughes j. Virus Evol. 2023 Jan 18;9(1):vead005. doi: 10.1093/ve/vead005. eCollection 2023. Virus Evol. 2023. PMID: 36793939 Free PMC article.
GLUE: a flexible software system for virus sequence data.
Singer JB, Thomson EC, McLauchlan J, Hughes J, Gifford RJ. Singer JB, et al. Among authors: hughes j. BMC Bioinformatics. 2018 Dec 18;19(1):532. doi: 10.1186/s12859-018-2459-9. BMC Bioinformatics. 2018. PMID: 30563445 Free PMC article.
Interpreting Viral Deep Sequencing Data with GLUE.
Singer JB, Thomson EC, Hughes J, Aranday-Cortes E, McLauchlan J, da Silva Filipe A, Tong L, Manso CF, Gifford RJ, Robertson DL, Barnes E, Ansari MA, Mbisa JL, Bibby DF, Bradshaw D, Smith D. Singer JB, et al. Among authors: hughes j. Viruses. 2019 Apr 3;11(4):323. doi: 10.3390/v11040323. Viruses. 2019. PMID: 30987147 Free PMC article.
Late Ebola virus relapse causing meningoencephalitis: a case report.
Jacobs M, Rodger A, Bell DJ, Bhagani S, Cropley I, Filipe A, Gifford RJ, Hopkins S, Hughes J, Jabeen F, Johannessen I, Karageorgopoulos D, Lackenby A, Lester R, Liu RS, MacConnachie A, Mahungu T, Martin D, Marshall N, Mepham S, Orton R, Palmarini M, Patel M, Perry C, Peters SE, Porter D, Ritchie D, Ritchie ND, Seaton RA, Sreenu VB, Templeton K, Warren S, Wilkie GS, Zambon M, Gopal R, Thomson EC. Jacobs M, et al. Among authors: hughes j. Lancet. 2016 Jul 30;388(10043):498-503. doi: 10.1016/S0140-6736(16)30386-5. Epub 2016 May 18. Lancet. 2016. PMID: 27209148 Free PMC article.
The evolutionary dynamics and epidemiological history of hepatitis C virus genotype 6, including unique strains from the Li community of Hainan Island, China.
Xu R, Aranday-Cortes E, Leitch ECM, Hughes J, Singer JB, Sreenu V, Tong L, da Silva Filipe A, Bamford CGG, Rong X, Huang J, Wang M, Fu Y, McLauchlan J. Xu R, et al. Among authors: hughes j. Virus Evol. 2022 Feb 16;8(1):veac012. doi: 10.1093/ve/veac012. eCollection 2022. Virus Evol. 2022. PMID: 35600095 Free PMC article.
DisCVR: Rapid viral diagnosis from high-throughput sequencing data.
Maabar M, Davison AJ, Vučak M, Thorburn F, Murcia PR, Gunson R, Palmarini M, Hughes J. Maabar M, et al. Among authors: hughes j. Virus Evol. 2019 Aug 26;5(2):vez033. doi: 10.1093/ve/vez033. eCollection 2019 Jul. Virus Evol. 2019. PMID: 31528358 Free PMC article.
Tracking SARS-CoV-2 mutations and variants through the COG-UK-Mutation Explorer.
Wright DW, Harvey WT, Hughes J, Cox M, Peacock TP, Colquhoun R, Jackson B, Orton R, Nielsen M, Hsu NS; COVID-19 Genomics UK (COG-UK) consortium; Harrison EM, de Silva TI, Rambaut A, Peacock SJ, Robertson DL, Carabelli AM. Wright DW, et al. Among authors: hughes j. Virus Evol. 2022 Mar 18;8(1):veac023. doi: 10.1093/ve/veac023. eCollection 2022. Virus Evol. 2022. PMID: 35502202 Free PMC article.
6,966 results