Zhou S - Search Results

1

Accelerated SARS-CoV-2 intrahost evolution leading to distinct genotypes during chronic infection.

Chaguza C, Hahn AM, Petrone ME, Zhou S, Ferguson D, Breban MI, Pham K, Peña-Hernández MA, Castaldi C, Hill V; Yale SARS-CoV-2 Genomic Surveillance Initiative; Schulz W, Swanstrom RI, Roberts SC, Grubaugh ND. Chaguza C, et al. Among authors: zhou s. Cell Rep Med. 2023 Feb 21;4(2):100943. doi: 10.1016/j.xcrm.2023.100943. Epub 2023 Jan 27. Cell Rep Med. 2023. PMID: 36791724 Free PMC article.

2

Primer ID Informs Next-Generation Sequencing Platforms and Reveals Preexisting Drug Resistance Mutations in the HIV-1 Reverse Transcriptase Coding Domain.

Keys JR, Zhou S, Anderson JA, Eron JJ Jr, Rackoff LA, Jabara C, Swanstrom R. Keys JR, et al. Among authors: zhou s. AIDS Res Hum Retroviruses. 2015 Jun;31(6):658-68. doi: 10.1089/AID.2014.0031. Epub 2015 Apr 2. AIDS Res Hum Retroviruses. 2015. PMID: 25748056 Free PMC article.

3

Primer ID Validates Template Sampling Depth and Greatly Reduces the Error Rate of Next-Generation Sequencing of HIV-1 Genomic RNA Populations.

Zhou S, Jones C, Mieczkowski P, Swanstrom R. Zhou S, et al. J Virol. 2015 Aug;89(16):8540-55. doi: 10.1128/JVI.00522-15. Epub 2015 Jun 3. J Virol. 2015. PMID: 26041299 Free PMC article.

4

R5 Macrophage-Tropic HIV-1 in the Male Genital Tract.

Bednar MM, Hauser BM, Ping LH, Dukhovlinova E, Zhou S, Arrildt KT, Hoffman IF, Eron JJ, Cohen MS, Swanstrom R. Bednar MM, et al. Among authors: zhou s. J Virol. 2015 Oct;89(20):10688-92. doi: 10.1128/JVI.01842-15. Epub 2015 Jul 29. J Virol. 2015. PMID: 26223642 Free PMC article.

5

Diversity and Tropism of HIV-1 Rebound Virus Populations in Plasma Level After Treatment Discontinuation.

Bednar MM, Hauser BM, Zhou S, Jacobson JM, Eron JJ Jr, Frank I, Swanstrom R. Bednar MM, et al. Among authors: zhou s. J Infect Dis. 2016 Aug 1;214(3):403-7. doi: 10.1093/infdis/jiw172. Epub 2016 Apr 30. J Infect Dis. 2016. PMID: 27132284 Free PMC article.

6

Deep Sequencing of the HIV-1 env Gene Reveals Discrete X4 Lineages and Linkage Disequilibrium between X4 and R5 Viruses in the V1/V2 and V3 Variable Regions.

Zhou S, Bednar MM, Sturdevant CB, Hauser BM, Swanstrom R. Zhou S, et al. J Virol. 2016 Jul 27;90(16):7142-58. doi: 10.1128/JVI.00441-16. Print 2016 Aug 15. J Virol. 2016. PMID: 27226378 Free PMC article.

7

Cytosine deamination and the precipitous decline of spontaneous mutation during Earth's history.

Lewis CA Jr, Crayle J, Zhou S, Swanstrom R, Wolfenden R. Lewis CA Jr, et al. Among authors: zhou s. Proc Natl Acad Sci U S A. 2016 Jul 19;113(29):8194-9. doi: 10.1073/pnas.1607580113. Epub 2016 Jul 5. Proc Natl Acad Sci U S A. 2016. PMID: 27382162 Free PMC article.

8

Quantification of the Latent HIV-1 Reservoir Using Ultra Deep Sequencing and Primer ID in a Viral Outgrowth Assay.

Lee SK, Zhou S, Baldoni PL, Spielvogel E, Archin NM, Hudgens MG, Margolis DM, Swanstrom R. Lee SK, et al. Among authors: zhou s. J Acquir Immune Defic Syndr. 2017 Feb 1;74(2):221-228. doi: 10.1097/QAI.0000000000001187. J Acquir Immune Defic Syndr. 2017. PMID: 27683060 Free PMC article.

9

Characterizing HIV-1 Splicing by Using Next-Generation Sequencing.

Emery A, Zhou S, Pollom E, Swanstrom R. Emery A, et al. Among authors: zhou s. J Virol. 2017 Feb 28;91(6):e02515-16. doi: 10.1128/JVI.02515-16. Print 2017 Mar 15. J Virol. 2017. PMID: 28077653 Free PMC article.

10

Sequencing the Biology of Entry: The Retroviral env Gene.

Swanstrom R, Graham WD, Zhou S. Swanstrom R, et al. Among authors: zhou s. Curr Top Microbiol Immunol. 2017;407:65-82. doi: 10.1007/82_2017_35. Curr Top Microbiol Immunol. 2017. PMID: 28688086 Free PMC article. Review.

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