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Unfolding and De-confounding: Biologically meaningful causal inference from longitudinal multi-omic networks using METALICA.
bioRxiv [Preprint]. 2023 Dec 13:2023.12.12.571384. doi: 10.1101/2023.12.12.571384.
bioRxiv. 2023.
PMID: 38168315
Free PMC article.
Preprint.
A novel approach for combining the metagenome, metaresistome, metareplicome and causal inference to determine the microbes and their antibiotic resistance gene repertoire that contribute to dysbiosis.
Stebliankin V, Sazal M, Valdes C, Mathee K, Narasimhan G.
Stebliankin V, et al. Among authors: sazal m.
Microb Genom. 2022 Dec;8(12):mgen000899. doi: 10.1099/mgen.0.000899.
Microb Genom. 2022.
PMID: 36748547
Free PMC article.
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Causal effects in microbiomes using interventional calculus.
Sazal M, Stebliankin V, Mathee K, Yoo C, Narasimhan G.
Sazal M, et al.
Sci Rep. 2021 Mar 11;11(1):5724. doi: 10.1038/s41598-021-84905-3.
Sci Rep. 2021.
PMID: 33707536
Free PMC article.
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Inferring directional relationships in microbial communities using signed Bayesian networks.
Sazal M, Mathee K, Ruiz-Perez D, Cickovski T, Narasimhan G.
Sazal M, et al.
BMC Genomics. 2020 Dec 21;21(Suppl 6):663. doi: 10.1186/s12864-020-07065-0.
BMC Genomics. 2020.
PMID: 33349235
Free PMC article.
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