Käll L - Search Results

1

Toward an Integrated Machine Learning Model of a Proteomics Experiment.

Neely BA, Dorfer V, Martens L, Bludau I, Bouwmeester R, Degroeve S, Deutsch EW, Gessulat S, Käll L, Palczynski P, Payne SH, Rehfeldt TG, Schmidt T, Schwämmle V, Uszkoreit J, Vizcaíno JA, Wilhelm M, Palmblad M. Neely BA, et al. Among authors: kall l. J Proteome Res. 2023 Mar 3;22(3):681-696. doi: 10.1021/acs.jproteome.2c00711. Epub 2023 Feb 6. J Proteome Res. 2023. PMID: 36744821 Free PMC article. Review.

2

Advantages of combined transmembrane topology and signal peptide prediction--the Phobius web server.

Käll L, Krogh A, Sonnhammer EL. Käll L, et al. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W429-32. doi: 10.1093/nar/gkm256. Epub 2007 May 5. Nucleic Acids Res. 2007. PMID: 17483518 Free PMC article.

3

QVALITY: non-parametric estimation of q-values and posterior error probabilities.

Käll L, Storey JD, Noble WS. Käll L, et al. Bioinformatics. 2009 Apr 1;25(7):964-6. doi: 10.1093/bioinformatics/btp021. Epub 2009 Feb 4. Bioinformatics. 2009. PMID: 19193729 Free PMC article.

4

Multi-omic data analysis using Galaxy.

Boekel J, Chilton JM, Cooke IR, Horvatovich PL, Jagtap PD, Käll L, Lehtiö J, Lukasse P, Moerland PD, Griffin TJ. Boekel J, et al. Among authors: kall l. Nat Biotechnol. 2015 Feb;33(2):137-9. doi: 10.1038/nbt.3134. Nat Biotechnol. 2015. PMID: 25658277 No abstract available.

5

A combined transmembrane topology and signal peptide prediction method.

Käll L, Krogh A, Sonnhammer EL. Käll L, et al. J Mol Biol. 2004 May 14;338(5):1027-36. doi: 10.1016/j.jmb.2004.03.016. J Mol Biol. 2004. PMID: 15111065

6

DeMix-Q: Quantification-Centered Data Processing Workflow.

Zhang B, Käll L, Zubarev RA. Zhang B, et al. Among authors: kall l. Mol Cell Proteomics. 2016 Apr;15(4):1467-78. doi: 10.1074/mcp.O115.055475. Epub 2016 Jan 4. Mol Cell Proteomics. 2016. PMID: 26729709 Free PMC article.

7

A general model of G protein-coupled receptor sequences and its application to detect remote homologs.

Wistrand M, Käll L, Sonnhammer EL. Wistrand M, et al. Among authors: kall l. Protein Sci. 2006 Mar;15(3):509-21. doi: 10.1110/ps.051745906. Epub 2006 Feb 1. Protein Sci. 2006. PMID: 16452613 Free PMC article.

8

Membrane protein shaving with thermolysin can be used to evaluate topology predictors.

Bendz M, Skwark M, Nilsson D, Granholm V, Cristobal S, Käll L, Elofsson A. Bendz M, et al. Among authors: kall l. Proteomics. 2013 May;13(9):1467-80. doi: 10.1002/pmic.201200517. Proteomics. 2013. PMID: 23512833 Free article.

9

Gene-specific correlation of RNA and protein levels in human cells and tissues.

Edfors F, Danielsson F, Hallström BM, Käll L, Lundberg E, Pontén F, Forsström B, Uhlén M. Edfors F, et al. Among authors: kall l. Mol Syst Biol. 2016 Oct 20;12(10):883. doi: 10.15252/msb.20167144. Mol Syst Biol. 2016. PMID: 27951527 Free PMC article.

10

From sequence to structure to networks.

Yosef N, Käll L. Yosef N, et al. Among authors: kall l. Genome Biol. 2008;9(11):326. doi: 10.1186/gb-2008-9-11-326. Epub 2008 Nov 4. Genome Biol. 2008. PMID: 19014404 Free PMC article.

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