Perahia D - Search Results

1

Small GTPase Ran: Depicting the nucleotide-specific conformational landscape of the functionally important C-terminus.

Czigleczki J, de Resende Lara PT, Dudas B, Jang H, Perahia D, Nussinov R, Balog E. Czigleczki J, et al. Among authors: perahia d. Front Mol Biosci. 2023 Jan 16;10:1111574. doi: 10.3389/fmolb.2023.1111574. eCollection 2023. Front Mol Biosci. 2023. PMID: 36726377 Free PMC article.

2

Machine learning and structure-based modeling for the prediction of UDP-glucuronosyltransferase inhibition.

Dudas B, Bagdad Y, Picard M, Perahia D, Miteva MA. Dudas B, et al. Among authors: perahia d. iScience. 2022 Oct 6;25(11):105290. doi: 10.1016/j.isci.2022.105290. eCollection 2022 Nov 18. iScience. 2022. PMID: 36304105 Free PMC article.

3

MDexciteR: Enhanced Sampling Molecular Dynamics by Excited Normal Modes or Principal Components Obtained from Experiments.

Costa MGS, Batista PR, Gomes A, Bastos LS, Louet M, Floquet N, Bisch PM, Perahia D. Costa MGS, et al. Among authors: perahia d. J Chem Theory Comput. 2023 Jan 9. doi: 10.1021/acs.jctc.2c00599. Online ahead of print. J Chem Theory Comput. 2023. PMID: 36622950

4

Unveiling mutation effects on the structural dynamics of the main protease from SARS-CoV-2 with hybrid simulation methods.

Gasparini P, Philot EA, Pantaleão SQ, Torres-Bonfim NESM, Kliousoff A, Quiroz RCN, Perahia D, Simões RP, Magro AJ, Scott AL. Gasparini P, et al. Among authors: perahia d. J Mol Graph Model. 2023 Jun;121:108443. doi: 10.1016/j.jmgm.2023.108443. Epub 2023 Feb 22. J Mol Graph Model. 2023. PMID: 36870228 Free PMC article.

5

Effect of phosphorylation on the structural dynamics, thermal stability of human dopamine transporter: A simulation study using normal modes, molecular dynamics and Markov State Model.

Quiroz RCN, Philot EA, General IJ, Perahia D, Scott AL. Quiroz RCN, et al. Among authors: perahia d. J Mol Graph Model. 2023 Jan;118:108359. doi: 10.1016/j.jmgm.2022.108359. Epub 2022 Oct 10. J Mol Graph Model. 2023. PMID: 36279761

6

From ionic clusters dynamics to network constraints in ionic polymer solutions.

Wijesinghe S, Kosgallana C, Senanayake M, Mohottalalage SS, Zolnierczuk P, Stingaciu L, Grest GS, Perahia D. Wijesinghe S, et al. Among authors: perahia d. Phys Rev E. 2024 Mar;109(3-1):034501. doi: 10.1103/PhysRevE.109.034501. Phys Rev E. 2024. PMID: 38632780

7

From Molecular Constraints to Macroscopic Dynamics in Associative Networks Formed by Ionizable Polymers: A Neutron Spin Echo and Molecular Dynamics Simulations Study.

Kosgallana C, Wijesinghe S, Senanayake M, Mohottalalage SS, Ohl M, Zolnierczuk P, Grest GS, Perahia D. Kosgallana C, et al. Among authors: perahia d. ACS Polym Au. 2024 Feb 22;4(2):149-156. doi: 10.1021/acspolymersau.3c00049. eCollection 2024 Apr 10. ACS Polym Au. 2024. PMID: 38618001 Free PMC article.

8

Assessment of Efficacy and Safety of Zagotenemab: Results From PERISCOPE-ALZ, a Phase 2 Study in Early Symptomatic Alzheimer Disease.

Fleisher AS, Munsie LM, Perahia DGS, Andersen SW, Higgins IA, Hauck PM, Lo AC, Sims JR, Brys M, Mintun M; PERISCOPE-ALZ Site Investigators. Fleisher AS, et al. Among authors: perahia dgs. Neurology. 2024 Mar 12;102(5):e208061. doi: 10.1212/WNL.0000000000208061. Epub 2024 Feb 22. Neurology. 2024. PMID: 38386949 Free PMC article. Clinical Trial.

9

Response of ionizable block copolymer assemblies to solvent dielectrics: A molecular dynamics study.

Senanayake M, Aryal D, Grest GS, Perahia D. Senanayake M, et al. Among authors: perahia d. J Chem Phys. 2023 Nov 21;159(19):194904. doi: 10.1063/5.0174410. J Chem Phys. 2023. PMID: 37982486

10

Safety, Tolerability, and Pharmacokinetics of Zagotenemab in Participants with Symptomatic Alzheimer's Disease: A Phase I Clinical Trial.

Willis BA, Lo AC, Dage JL, Shcherbinin S, Chinchen L, Andersen SW, LaBell ES, Perahia DGS, Hauck PM, Lowe SL. Willis BA, et al. Among authors: perahia dgs. J Alzheimers Dis Rep. 2023 Sep 15;7(1):1015-1024. doi: 10.3233/ADR-230012. eCollection 2023. J Alzheimers Dis Rep. 2023. PMID: 37849628 Free PMC article.

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