Xu Z - Search Results

1

AbAdapt: an adaptive approach to predicting antibody-antigen complex structures from sequence.

Davila A, Xu Z, Li S, Rozewicki J, Wilamowski J, Kotelnikov S, Kozakov D, Teraguchi S, Standley DM. Davila A, et al. Among authors: xu z. Bioinform Adv. 2022 Mar 7;2(1):vbac015. doi: 10.1093/bioadv/vbac015. eCollection 2022. Bioinform Adv. 2022. PMID: 36699363 Free PMC article.

2

Structural Modeling of Lymphocyte Receptors and Their Antigens.

Li S, Wilamowski J, Teraguchi S, van Eerden FJ, Rozewicki J, Davila A, Xu Z, Katoh K, Standley DM. Li S, et al. Among authors: xu z. Methods Mol Biol. 2019;2048:207-229. doi: 10.1007/978-1-4939-9728-2_17. Methods Mol Biol. 2019. PMID: 31396940

3

Structural basis for a highly (S)-enantioselective reductase towards aliphatic ketones with only one carbon difference between side chain.

Koesoema AA, Sugiyama Y, Xu Z, Standley DM, Senda M, Senda T, Matsuda T. Koesoema AA, et al. Among authors: xu z. Appl Microbiol Biotechnol. 2019 Dec;103(23-24):9543-9553. doi: 10.1007/s00253-019-10093-w. Epub 2019 Nov 15. Appl Microbiol Biotechnol. 2019. PMID: 31482280

4

Reversible control of enantioselectivity by the length of ketone substituent in biocatalytic reduction.

Koesoema AA, Sugiyama Y, Sriwong KT, Xu Z, Verina S, Standley DM, Senda M, Senda T, Matsuda T. Koesoema AA, et al. Among authors: xu z. Appl Microbiol Biotechnol. 2019 Dec;103(23-24):9529-9541. doi: 10.1007/s00253-019-10206-5. Epub 2019 Nov 13. Appl Microbiol Biotechnol. 2019. PMID: 31720775

5

Correction to: Structural basis for a highly (S)-enantioselective reductase towards aliphatic ketones with only one carbon difference between side chain.

Koesoema AA, Sugiyama Y, Xu Z, Standley DM, Senda M, Senda T, Matsuda T. Koesoema AA, et al. Among authors: xu z. Appl Microbiol Biotechnol. 2019 Dec;103(23-24):9555. doi: 10.1007/s00253-019-10138-0. Appl Microbiol Biotechnol. 2019. PMID: 31728584

6

Methods for sequence and structural analysis of B and T cell receptor repertoires.

Teraguchi S, Saputri DS, Llamas-Covarrubias MA, Davila A, Diez D, Nazlica SA, Rozewicki J, Ismanto HS, Wilamowski J, Xie J, Xu Z, Loza-Lopez MJ, van Eerden FJ, Li S, Standley DM. Teraguchi S, et al. Among authors: xu z. Comput Struct Biotechnol J. 2020 Jul 17;18:2000-2011. doi: 10.1016/j.csbj.2020.07.008. eCollection 2020. Comput Struct Biotechnol J. 2020. PMID: 32802272 Free PMC article. Review.

7

Flexible, Functional, and Familiar: Characteristics of SARS-CoV-2 Spike Protein Evolution.

Saputri DS, Li S, van Eerden FJ, Rozewicki J, Xu Z, Ismanto HS, Davila A, Teraguchi S, Katoh K, Standley DM. Saputri DS, et al. Among authors: xu z. Front Microbiol. 2020 Sep 17;11:2112. doi: 10.3389/fmicb.2020.02112. eCollection 2020. Front Microbiol. 2020. PMID: 33042039 Free PMC article.

8

Improved Antibody-Specific Epitope Prediction Using AlphaFold and AbAdapt.

Xu Z, Davila A, Wilamowski J, Teraguchi S, Standley DM. Xu Z, et al. Chembiochem. 2022 Sep 16;23(18):e202200303. doi: 10.1002/cbic.202200303. Epub 2022 Aug 11. Chembiochem. 2022. PMID: 35893479 Free PMC article.

9

Advances in antibody discovery from human BCR repertoires.

Xu Z, Ismanto HS, Zhou H, Saputri DS, Sugihara F, Standley DM. Xu Z, et al. Front Bioinform. 2022 Oct 20;2:1044975. doi: 10.3389/fbinf.2022.1044975. eCollection 2022. Front Bioinform. 2022. PMID: 36338807 Free PMC article. Review.

10

Structural Modeling of Adaptive Immune Responses to Infection.

Lusiany T, Xu Z, Saputri DS, Ismanto HS, Nazlica SA, Standley DM. Lusiany T, et al. Among authors: xu z. Methods Mol Biol. 2023;2552:283-294. doi: 10.1007/978-1-0716-2609-2_15. Methods Mol Biol. 2023. PMID: 36346598

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