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Persistent virus-specific and clonally expanded antibody-secreting cells respond to induced self-antigen in the CNS.
Agrafiotis A, Dizerens R, Vincenti I, Wagner I, Kuhn R, Shlesinger D, Manero-Carranza M, Cotet TS, Hong KL, Page N, Fonta N, Shammas G, Mariotte A, Piccinno M, Kreutzfeldt M, Gruntz B, Ehling R, Genovese A, Pedrioli A, Dounas A, Franzenburg S, Tumani H, Kümpfel T, Kavaka V, Gerdes LA, Dornmair K, Beltrán E, Oxenius A, Reddy ST, Merkler D, Yermanos A. Agrafiotis A, et al. Among authors: kuhn r. Acta Neuropathol. 2023 Mar;145(3):335-355. doi: 10.1007/s00401-023-02537-5. Epub 2023 Jan 25. Acta Neuropathol. 2023. PMID: 36695896 Free PMC article.
Platypus: an open-access software for integrating lymphocyte single-cell immune repertoires with transcriptomes.
Yermanos A, Agrafiotis A, Kuhn R, Robbiani D, Yates J, Papadopoulou C, Han J, Sandu I, Weber C, Bieberich F, Vazquez-Lombardi R, Dounas A, Neumeier D, Oxenius A, Reddy ST. Yermanos A, et al. Among authors: kuhn r. NAR Genom Bioinform. 2021 Apr 14;3(2):lqab023. doi: 10.1093/nargab/lqab023. eCollection 2021 Jun. NAR Genom Bioinform. 2021. PMID: 33884369 Free PMC article.
Profiling the specificity of clonally expanded plasma cells during chronic viral infection by single-cell analysis.
Neumeier D, Pedrioli A, Genovese A, Sandu I, Ehling R, Hong KL, Papadopoulou C, Agrafiotis A, Kuhn R, Shlesinger D, Robbiani D, Han J, Hauri L, Csepregi L, Greiff V, Merkler D, Reddy ST, Oxenius A, Yermanos A. Neumeier D, et al. Among authors: kuhn r. Eur J Immunol. 2022 Feb;52(2):297-311. doi: 10.1002/eji.202149331. Epub 2021 Nov 23. Eur J Immunol. 2022. PMID: 34727578 Free PMC article.
Phenotypic determinism and stochasticity in antibody repertoires of clonally expanded plasma cells.
Neumeier D, Yermanos A, Agrafiotis A, Csepregi L, Chowdhury T, Ehling RA, Kuhn R, Cotet TS, Brisset-Di Roberto R, Di Tacchio M, Antonialli R, Starkie D, Lightwood DJ, Oxenius A, Reddy ST. Neumeier D, et al. Among authors: kuhn r. Proc Natl Acad Sci U S A. 2022 May 3;119(18):e2113766119. doi: 10.1073/pnas.2113766119. Epub 2022 Apr 29. Proc Natl Acad Sci U S A. 2022. PMID: 35486691 Free PMC article.
Single-cell immune repertoire sequencing of B and T cells in murine models of infection and autoimmunity.
Shlesinger D, Hong KL, Shammas G, Page N, Sandu I, Agrafiotis A, Kreiner V, Fonta N, Vincenti I, Wagner I, Piccinno M, Mariotte A, Klimek B, Dizerens R, Manero-Carranza M, Kuhn R, Ehling R, Frei L, Khodaverdi K, Panetti C, Joller N, Oxenius A, Merkler D, Reddy ST, Yermanos A. Shlesinger D, et al. Among authors: kuhn r. Genes Immun. 2022 Sep;23(6):183-195. doi: 10.1038/s41435-022-00180-w. Epub 2022 Aug 26. Genes Immun. 2022. PMID: 36028771 Free PMC article.
Generation of a single-cell B cell atlas of antibody repertoires and transcriptomes to identify signatures associated with antigen specificity.
Agrafiotis A, Neumeier D, Hong KL, Chowdhury T, Ehling R, Kuhn R, Sandu I, Kreiner V, Cotet TS, Shlesinger D, Laslo D, Anzböck S, Starkie D, Lightwood DJ, Oxenius A, Reddy ST, Yermanos A. Agrafiotis A, et al. Among authors: kuhn r. iScience. 2023 Jan 25;26(3):106055. doi: 10.1016/j.isci.2023.106055. eCollection 2023 Mar 17. iScience. 2023. PMID: 36852274 Free PMC article.
ePlatypus: an ecosystem for computational analysis of immunogenomics data.
Cotet TS, Agrafiotis A, Kreiner V, Kuhn R, Shlesinger D, Manero-Carranza M, Khodaverdi K, Kladis E, Desideri Perea A, Maassen-Veeters D, Glänzer W, Massery S, Guerci L, Hong KL, Han J, Stiklioraitis K, D'Arcy VM, Dizerens R, Kilchenmann S, Stalder L, Nissen L, Vogelsanger B, Anzböck S, Laslo D, Bakker S, Kondorosy M, Venerito M, Sanz García A, Feller I, Oxenius A, Reddy ST, Yermanos A. Cotet TS, et al. Among authors: kuhn r. Bioinformatics. 2023 Sep 2;39(9):btad553. doi: 10.1093/bioinformatics/btad553. Bioinformatics. 2023. PMID: 37682115 Free PMC article.
1,397 results