de Souza N - Search Results

1

A comprehensive single-cell map of T cell exhaustion-associated immune environments in human breast cancer.

Tietscher S, Wagner J, Anzeneder T, Langwieder C, Rees M, Sobottka B, de Souza N, Bodenmiller B. Tietscher S, et al. Among authors: de souza n. Nat Commun. 2023 Jan 6;14(1):98. doi: 10.1038/s41467-022-35238-w. Nat Commun. 2023. PMID: 36609566 Free PMC article.

2

Three-dimensional imaging mass cytometry for highly multiplexed molecular and cellular mapping of tissues and the tumor microenvironment.

Kuett L, Catena R, Özcan A, Plüss A; Cancer Grand Challenges IMAXT Consortium; Schraml P, Moch H, de Souza N, Bodenmiller B. Kuett L, et al. Among authors: de souza n. Nat Cancer. 2022 Jan;3(1):122-133. doi: 10.1038/s43018-021-00301-w. Epub 2021 Dec 24. Nat Cancer. 2022. PMID: 35121992 Free PMC article.

3

Mass cytometric and transcriptomic profiling of epithelial-mesenchymal transitions in human mammary cell lines.

Wagner J, Masek M, Jacobs A, Soneson C, Sivapatham S, Damond N, de Souza N, Robinson MD, Bodenmiller B. Wagner J, et al. Among authors: de souza n. Sci Data. 2022 Feb 9;9(1):44. doi: 10.1038/s41597-022-01137-4. Sci Data. 2022. PMID: 35140234 Free PMC article.

4

Deciphering the signaling network of breast cancer improves drug sensitivity prediction.

Tognetti M, Gabor A, Yang M, Cappelletti V, Windhager J, Rueda OM, Charmpi K, Esmaeilishirazifard E, Bruna A, de Souza N, Caldas C, Beyer A, Picotti P, Saez-Rodriguez J, Bodenmiller B. Tognetti M, et al. Among authors: de souza n. Cell Syst. 2021 May 19;12(5):401-418.e12. doi: 10.1016/j.cels.2021.04.002. Epub 2021 Apr 30. Cell Syst. 2021. PMID: 33932331 Free article.

5

A quantitative analysis of the interplay of environment, neighborhood, and cell state in 3D spheroids.

Zanotelli VR, Leutenegger M, Lun XK, Georgi F, de Souza N, Bodenmiller B. Zanotelli VR, et al. Among authors: de souza n. Mol Syst Biol. 2020 Dec;16(12):e9798. doi: 10.15252/msb.20209798. Mol Syst Biol. 2020. PMID: 33369114 Free PMC article.

6

A distinct innate immune signature marks progression from mild to severe COVID-19.

Chevrier S, Zurbuchen Y, Cervia C, Adamo S, Raeber ME, de Souza N, Sivapatham S, Jacobs A, Bachli E, Rudiger A, Stüssi-Helbling M, Huber LC, Schaer DJ, Nilsson J, Boyman O, Bodenmiller B. Chevrier S, et al. Among authors: de souza n. Cell Rep Med. 2020 Dec 26;2(1):100166. doi: 10.1016/j.xcrm.2020.100166. eCollection 2021 Jan 19. Cell Rep Med. 2020. PMID: 33521697 Free PMC article.

7

A machine learning-based chemoproteomic approach to identify drug targets and binding sites in complex proteomes.

Piazza I, Beaton N, Bruderer R, Knobloch T, Barbisan C, Chandat L, Sudau A, Siepe I, Rinner O, de Souza N, Picotti P, Reiter L. Piazza I, et al. Among authors: de souza n. Nat Commun. 2020 Aug 21;11(1):4200. doi: 10.1038/s41467-020-18071-x. Nat Commun. 2020. PMID: 32826910 Free PMC article.

8

Single-cell genetics.

de Souza N. de Souza N. Nat Methods. 2013 Sep;10(9):820. doi: 10.1038/nmeth.2626. Nat Methods. 2013. PMID: 24143825 No abstract available.

9

Global, in situ analysis of the structural proteome in individuals with Parkinson's disease to identify a new class of biomarker.

Mackmull MT, Nagel L, Sesterhenn F, Muntel J, Grossbach J, Stalder P, Bruderer R, Reiter L, van de Berg WDJ, de Souza N, Beyer A, Picotti P. Mackmull MT, et al. Among authors: de souza n. Nat Struct Mol Biol. 2022 Oct;29(10):978-989. doi: 10.1038/s41594-022-00837-0. Epub 2022 Oct 12. Nat Struct Mol Biol. 2022. PMID: 36224378

10

Proteome-wide structural changes measured with limited proteolysis-mass spectrometry: an advanced protocol for high-throughput applications.

Malinovska L, Cappelletti V, Kohler D, Piazza I, Tsai TH, Pepelnjak M, Stalder P, Dörig C, Sesterhenn F, Elsässer F, Kralickova L, Beaton N, Reiter L, de Souza N, Vitek O, Picotti P. Malinovska L, et al. Among authors: de souza n. Nat Protoc. 2023 Mar;18(3):659-682. doi: 10.1038/s41596-022-00771-x. Epub 2022 Dec 16. Nat Protoc. 2023. PMID: 36526727 Review.

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