Kertesz-Farkas A - Search Results

1

The Crux Toolkit for Analysis of Bottom-Up Tandem Mass Spectrometry Proteomics Data.

Kertesz-Farkas A, Nii Adoquaye Acquaye FL, Bhimani K, Eng JK, Fondrie WE, Grant C, Hoopmann MR, Lin A, Lu YY, Moritz RL, MacCoss MJ, Noble WS. Kertesz-Farkas A, et al. J Proteome Res. 2023 Feb 3;22(2):561-569. doi: 10.1021/acs.jproteome.2c00615. Epub 2023 Jan 4. J Proteome Res. 2023. PMID: 36598107 Free PMC article.

2

JBioWH: an open-source Java framework for bioinformatics data integration.

Vera R, Perez-Riverol Y, Perez S, Ligeti B, Kertész-Farkas A, Pongor S. Vera R, et al. Database (Oxford). 2013 Jul 11;2013:bat051. doi: 10.1093/database/bat051. Print 2013. Database (Oxford). 2013. PMID: 23846595 Free PMC article.

3

Balanced ROC analysis (BAROC) protocol for the evaluation of protein similarities.

Busa-Fekete R, Kertész-Farkas A, Kocsor A, Pongor S. Busa-Fekete R, et al. J Biochem Biophys Methods. 2008 Apr 24;70(6):1210-4. doi: 10.1016/j.jbbm.2007.06.003. Epub 2007 Jul 5. J Biochem Biophys Methods. 2008. PMID: 17689617

4

Toward an automatic method for extracting cancer- and other disease-related point mutations from the biomedical literature.

Doughty E, Kertesz-Farkas A, Bodenreider O, Thompson G, Adadey A, Peterson T, Kann MG. Doughty E, et al. Bioinformatics. 2011 Feb 1;27(3):408-15. doi: 10.1093/bioinformatics/btq667. Epub 2010 Dec 7. Bioinformatics. 2011. PMID: 21138947 Free PMC article.

5

Crux: rapid open source protein tandem mass spectrometry analysis.

McIlwain S, Tamura K, Kertesz-Farkas A, Grant CE, Diament B, Frewen B, Howbert JJ, Hoopmann MR, Käll L, Eng JK, MacCoss MJ, Noble WS. McIlwain S, et al. J Proteome Res. 2014 Oct 3;13(10):4488-91. doi: 10.1021/pr500741y. Epub 2014 Sep 9. J Proteome Res. 2014. PMID: 25182276 Free PMC article.

6

Tandem Mass Spectrum Identification via Cascaded Search.

Kertesz-Farkas A, Keich U, Noble WS. Kertesz-Farkas A, et al. J Proteome Res. 2015 Aug 7;14(8):3027-38. doi: 10.1021/pr501173s. Epub 2015 Jun 30. J Proteome Res. 2015. PMID: 26084232 Free PMC article.

7

Improved False Discovery Rate Estimation Procedure for Shotgun Proteomics.

Keich U, Kertesz-Farkas A, Noble WS. Keich U, et al. J Proteome Res. 2015 Aug 7;14(8):3148-61. doi: 10.1021/acs.jproteome.5b00081. Epub 2015 Jul 27. J Proteome Res. 2015. PMID: 26152888 Free PMC article.

8

Correction to "Improved False Discovery Rate Estimation Procedure for Shotgun Proteomics".

Keich U, Kertesz-Farkas A, Noble WS. Keich U, et al. J Proteome Res. 2016 Dec 2;15(12):4779-4780. doi: 10.1021/acs.jproteome.6b00853. Epub 2016 Oct 21. J Proteome Res. 2016. PMID: 27767314 Free PMC article. No abstract available.

9

Bias in False Discovery Rate Estimation in Mass-Spectrometry-Based Peptide Identification.

Danilova Y, Voronkova A, Sulimov P, Kertész-Farkas A. Danilova Y, et al. Among authors: kertesz farkas a. J Proteome Res. 2019 May 3;18(5):2354-2358. doi: 10.1021/acs.jproteome.8b00991. Epub 2019 Apr 18. J Proteome Res. 2019. PMID: 30983355

10

Tailor: A Nonparametric and Rapid Score Calibration Method for Database Search-Based Peptide Identification in Shotgun Proteomics.

Sulimov P, Kertész-Farkas A. Sulimov P, et al. Among authors: kertesz farkas a. J Proteome Res. 2020 Apr 3;19(4):1481-1490. doi: 10.1021/acs.jproteome.9b00736. Epub 2020 Mar 25. J Proteome Res. 2020. PMID: 32175744

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