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RecGraph: recombination-aware alignment of sequences to variation graphs.
Avila Cartes J, Bonizzoni P, Ciccolella S, Della Vedova G, Denti L, Didelot X, Monti DC, Pirola Y. Avila Cartes J, et al. Among authors: ciccolella s. Bioinformatics. 2024 May 2;40(5):btae292. doi: 10.1093/bioinformatics/btae292. Bioinformatics. 2024. PMID: 38676570
MALVIRUS: an integrated application for viral variant analysis.
Ciccolella S, Denti L, Bonizzoni P, Della Vedova G, Pirola Y, Previtali M. Ciccolella S, et al. BMC Bioinformatics. 2022 Apr 19;22(Suppl 15):625. doi: 10.1186/s12859-022-04668-0. BMC Bioinformatics. 2022. PMID: 35439933 Free PMC article.
Simpler and Faster Development of Tumor Phylogeny Pipelines.
Ali S, Ciccolella S, Lucarella L, Vedova GD, Patterson M. Ali S, et al. Among authors: ciccolella s. J Comput Biol. 2021 Nov;28(11):1142-1155. doi: 10.1089/cmb.2021.0271. Epub 2021 Oct 25. J Comput Biol. 2021. PMID: 34698531 Free article.
Effective Clustering for Single Cell Sequencing Cancer Data.
Ciccolella S, Patterson M, Bonizzoni P, Della Vedova G. Ciccolella S, et al. IEEE J Biomed Health Inform. 2021 Nov;25(11):4068-4078. doi: 10.1109/JBHI.2021.3081380. Epub 2021 Nov 5. IEEE J Biomed Health Inform. 2021. PMID: 34003758
11 results