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Multi-Drug Resistant Staphylococcus aureus Carriage in Abattoir Workers in Busia, Kenya.
Obanda BA, Gibbons CL, Fèvre EM, Bebora L, Gitao G, Ogara W, Wang SH, Gebreyes W, Ngetich R, Blane B, Coll F, Harrison EM, Kariuki S, Peacock SJ, Cook EAJ. Obanda BA, et al. Among authors: coll f. Antibiotics (Basel). 2022 Dec 1;11(12):1726. doi: 10.3390/antibiotics11121726. Antibiotics (Basel). 2022. PMID: 36551383 Free PMC article.
Characterization of genomic variations in SNPs of PE_PGRS genes reveals deletions and insertions in extensively drug resistant (XDR) M. tuberculosis strains from Pakistan.
Kanji A, Hasan Z, Ali A, McNerney R, Mallard K, Coll F, Hill-Cawthorne G, Nair M, Clark TG, Zaver A, Jafri S, Hasan R. Kanji A, et al. Among authors: coll f. Int J Mycobacteriol. 2015 Mar;4(1):73-9. doi: 10.1016/j.ijmyco.2014.11.049. Epub 2015 Jan 21. Int J Mycobacteriol. 2015. PMID: 26655202 Free article.
Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages.
Phelan JE, Coll F, Bergval I, Anthony RM, Warren R, Sampson SL, Gey van Pittius NC, Glynn JR, Crampin AC, Alves A, Bessa TB, Campino S, Dheda K, Grandjean L, Hasan R, Hasan Z, Miranda A, Moore D, Panaiotov S, Perdigao J, Portugal I, Sheen P, de Oliveira Sousa E, Streicher EM, van Helden PD, Viveiros M, Hibberd ML, Pain A, McNerney R, Clark TG. Phelan JE, et al. Among authors: coll f. BMC Genomics. 2016 Feb 29;17:151. doi: 10.1186/s12864-016-2467-y. BMC Genomics. 2016. PMID: 26923687 Free PMC article.
Turkish and Japanese Mycobacterium tuberculosis sublineages share a remote common ancestor.
Refrégier G, Abadia E, Matsumoto T, Ano H, Takashima T, Tsuyuguchi I, Aktas E, Cömert F, Gomgnimbou MK, Panaiotov S, Phelan J, Coll F, McNerney R, Pain A, Clark TG, Sola C. Refrégier G, et al. Among authors: coll f. Infect Genet Evol. 2016 Nov;45:461-473. doi: 10.1016/j.meegid.2016.10.009. Epub 2016 Oct 14. Infect Genet Evol. 2016. PMID: 27746295
Unraveling Mycobacterium tuberculosis genomic diversity and evolution in Lisbon, Portugal, a highly drug resistant setting.
Perdigão J, Silva H, Machado D, Macedo R, Maltez F, Silva C, Jordao L, Couto I, Mallard K, Coll F, Hill-Cawthorne GA, McNerney R, Pain A, Clark TG, Viveiros M, Portugal I. Perdigão J, et al. Among authors: coll f. BMC Genomics. 2014 Nov 18;15(1):991. doi: 10.1186/1471-2164-15-991. BMC Genomics. 2014. PMID: 25407810 Free PMC article.
Mathematical modelling for antibiotic resistance control policy: do we know enough?
Knight GM, Davies NG, Colijn C, Coll F, Donker T, Gifford DR, Glover RE, Jit M, Klemm E, Lehtinen S, Lindsay JA, Lipsitch M, Llewelyn MJ, Mateus ALP, Robotham JV, Sharland M, Stekel D, Yakob L, Atkins KE. Knight GM, et al. Among authors: coll f. BMC Infect Dis. 2019 Nov 29;19(1):1011. doi: 10.1186/s12879-019-4630-y. BMC Infect Dis. 2019. PMID: 31783803 Free PMC article.
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