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Novel machine learning approaches revolutionize protein knowledge.
Bordin N, Dallago C, Heinzinger M, Kim S, Littmann M, Rauer C, Steinegger M, Rost B, Orengo C. Bordin N, et al. Among authors: littmann m. Trends Biochem Sci. 2023 Apr;48(4):345-359. doi: 10.1016/j.tibs.2022.11.001. Epub 2022 Dec 9. Trends Biochem Sci. 2023. PMID: 36504138 Free PMC article. Review.
Detailed prediction of protein sub-nuclear localization.
Littmann M, Goldberg T, Seitz S, Bodén M, Rost B. Littmann M, et al. BMC Bioinformatics. 2019 Apr 23;20(1):205. doi: 10.1186/s12859-019-2790-9. BMC Bioinformatics. 2019. PMID: 31014229 Free PMC article.
Clustering FunFams using sequence embeddings improves EC purity.
Littmann M, Bordin N, Heinzinger M, Schütze K, Dallago C, Orengo C, Rost B. Littmann M, et al. Bioinformatics. 2021 Oct 25;37(20):3449-3455. doi: 10.1093/bioinformatics/btab371. Bioinformatics. 2021. PMID: 33978744 Free PMC article.
PredictProtein - Predicting Protein Structure and Function for 29 Years.
Bernhofer M, Dallago C, Karl T, Satagopam V, Heinzinger M, Littmann M, Olenyi T, Qiu J, Schütze K, Yachdav G, Ashkenazy H, Ben-Tal N, Bromberg Y, Goldberg T, Kajan L, O'Donoghue S, Sander C, Schafferhans A, Schlessinger A, Vriend G, Mirdita M, Gawron P, Gu W, Jarosz Y, Trefois C, Steinegger M, Schneider R, Rost B. Bernhofer M, et al. Among authors: littmann m. Nucleic Acids Res. 2021 Jul 2;49(W1):W535-W540. doi: 10.1093/nar/gkab354. Nucleic Acids Res. 2021. PMID: 33999203 Free PMC article.
Contrastive learning on protein embeddings enlightens midnight zone.
Heinzinger M, Littmann M, Sillitoe I, Bordin N, Orengo C, Rost B. Heinzinger M, et al. Among authors: littmann m. NAR Genom Bioinform. 2022 Jun 11;4(2):lqac043. doi: 10.1093/nargab/lqac043. eCollection 2022 Jun. NAR Genom Bioinform. 2022. PMID: 35702380 Free PMC article.
51 results