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PBSIM3: a simulator for all types of PacBio and ONT long reads.
Ono Y, Hamada M, Asai K. Ono Y, et al. Among authors: asai k. NAR Genom Bioinform. 2022 Dec 1;4(4):lqac092. doi: 10.1093/nargab/lqac092. eCollection 2022 Dec. NAR Genom Bioinform. 2022. PMID: 36465498 Free PMC article.
Mining frequent stem patterns from unaligned RNA sequences.
Hamada M, Tsuda K, Kudo T, Kin T, Asai K. Hamada M, et al. Among authors: asai k. Bioinformatics. 2006 Oct 15;22(20):2480-7. doi: 10.1093/bioinformatics/btl431. Epub 2006 Aug 14. Bioinformatics. 2006. PMID: 16908501
Software.ncrna.org: web servers for analyses of RNA sequences.
Asai K, Kiryu H, Hamada M, Tabei Y, Sato K, Matsui H, Sakakibara Y, Terai G, Mituyama T. Asai K, et al. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W75-8. doi: 10.1093/nar/gkn222. Epub 2008 Apr 25. Nucleic Acids Res. 2008. PMID: 18440970 Free PMC article.
CENTROIDFOLD: a web server for RNA secondary structure prediction.
Sato K, Hamada M, Asai K, Mituyama T. Sato K, et al. Among authors: asai k. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W277-80. doi: 10.1093/nar/gkp367. Epub 2009 May 12. Nucleic Acids Res. 2009. PMID: 19435882 Free PMC article.
1,325 results