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SCExecute: custom cell barcode-stratified analyses of scRNA-seq data.
Bioinformatics. 2023 Jan 1;39(1):btac768. doi: 10.1093/bioinformatics/btac768.
Bioinformatics. 2023.
PMID: 36448703
Free PMC article.
Extracellular vesicles carrying HIV-1 Nef induce long-term hyperreactivity of myeloid cells.
Dubrovsky L, Brichacek B, Prashant NM, Pushkarsky T, Mukhamedova N, Fleetwood AJ, Xu Y, Dragoljevic D, Fitzgerald M, Horvath A, Murphy AJ, Sviridov D, Bukrinsky MI.
Dubrovsky L, et al. Among authors: prashant nm.
Cell Rep. 2022 Nov 22;41(8):111674. doi: 10.1016/j.celrep.2022.111674.
Cell Rep. 2022.
PMID: 36417867
Free PMC article.
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SCReadCounts: estimation of cell-level SNVs expression from scRNA-seq data.
Prashant NM, Alomran N, Chen Y, Liu H, Bousounis P, Movassagh M, Edwards N, Horvath A.
Prashant NM, et al.
BMC Genomics. 2021 Sep 22;22(1):689. doi: 10.1186/s12864-021-07974-8.
BMC Genomics. 2021.
PMID: 34551708
Free PMC article.
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scReQTL: an approach to correlate SNVs to gene expression from individual scRNA-seq datasets.
Liu H, Prashant NM, Spurr LF, Bousounis P, Alomran N, Ibeawuchi H, Sein J, Słowiński P, Tsaneva-Atanasova K, Horvath A.
Liu H, et al. Among authors: prashant nm.
BMC Genomics. 2021 Jan 8;22(1):40. doi: 10.1186/s12864-020-07334-y.
BMC Genomics. 2021.
PMID: 33419390
Free PMC article.
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Evaluation of an angiotensin Type 1 receptor blocker on the reconsolidation of fear memory.
Swiercz AP, Iyer L, Yu Z, Edwards A, Prashant NM, Nguyen BN, Horvath A, Marvar PJ.
Swiercz AP, et al. Among authors: prashant nm.
Transl Psychiatry. 2020 Oct 27;10(1):363. doi: 10.1038/s41398-020-01043-6.
Transl Psychiatry. 2020.
PMID: 33110066
Free PMC article.
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ReQTL: identifying correlations between expressed SNVs and gene expression using RNA-sequencing data.
Spurr LF, Alomran N, Bousounis P, Reece-Stremtan D, Prashant NM, Liu H, Słowiński P, Li M, Zhang Q, Sein J, Asher G, Crandall KA, Tsaneva-Atanasova K, Horvath A.
Spurr LF, et al. Among authors: prashant nm.
Bioinformatics. 2020 Mar 1;36(5):1351-1359. doi: 10.1093/bioinformatics/btz750.
Bioinformatics. 2020.
PMID: 31589315
Free PMC article.
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