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Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity.
Shaffer JP, Nothias LF, Thompson LR, Sanders JG, Salido RA, Couvillion SP, Brejnrod AD, Lejzerowicz F, Haiminen N, Huang S, Lutz HL, Zhu Q, Martino C, Morton JT, Karthikeyan S, Nothias-Esposito M, Dührkop K, Böcker S, Kim HW, Aksenov AA, Bittremieux W, Minich JJ, Marotz C, Bryant MM, Sanders K, Schwartz T, Humphrey G, Vásquez-Baeza Y, Tripathi A, Parida L, Carrieri AP, Beck KL, Das P, González A, McDonald D, Ladau J, Karst SM, Albertsen M, Ackermann G, DeReus J, Thomas T, Petras D, Shade A, Stegen J, Song SJ, Metz TO, Swafford AD, Dorrestein PC, Jansson JK, Gilbert JA, Knight R; Earth Microbiome Project 500 (EMP500) Consortium. Shaffer JP, et al. Among authors: gilbert ja. Nat Microbiol. 2022 Dec;7(12):2128-2150. doi: 10.1038/s41564-022-01266-x. Epub 2022 Nov 28. Nat Microbiol. 2022. PMID: 36443458 Free PMC article.
Omics for understanding microbial functional dynamics.
Jansson JK, Neufeld JD, Moran MA, Gilbert JA. Jansson JK, et al. Among authors: gilbert ja. Environ Microbiol. 2012 Jan;14(1):1-3. doi: 10.1111/j.1462-2920.2011.02518.x. Epub 2011 Jun 8. Environ Microbiol. 2012. PMID: 21651688 No abstract available.
Unlocking the potential of metagenomics through replicated experimental design.
Knight R, Jansson J, Field D, Fierer N, Desai N, Fuhrman JA, Hugenholtz P, van der Lelie D, Meyer F, Stevens R, Bailey MJ, Gordon JI, Kowalchuk GA, Gilbert JA. Knight R, et al. Among authors: gilbert ja. Nat Biotechnol. 2012 Jun 7;30(6):513-20. doi: 10.1038/nbt.2235. Nat Biotechnol. 2012. PMID: 22678395 Free PMC article.
Evidence for a persistent microbial seed bank throughout the global ocean.
Gibbons SM, Caporaso JG, Pirrung M, Field D, Knight R, Gilbert JA. Gibbons SM, et al. Among authors: gilbert ja. Proc Natl Acad Sci U S A. 2013 Mar 19;110(12):4651-5. doi: 10.1073/pnas.1217767110. Epub 2013 Mar 4. Proc Natl Acad Sci U S A. 2013. PMID: 23487761 Free PMC article.
Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill.
Mason OU, Scott NM, Gonzalez A, Robbins-Pianka A, Bælum J, Kimbrel J, Bouskill NJ, Prestat E, Borglin S, Joyner DC, Fortney JL, Jurelevicius D, Stringfellow WT, Alvarez-Cohen L, Hazen TC, Knight R, Gilbert JA, Jansson JK. Mason OU, et al. Among authors: gilbert ja. ISME J. 2014 Jul;8(7):1464-75. doi: 10.1038/ismej.2013.254. Epub 2014 Jan 23. ISME J. 2014. PMID: 24451203 Free PMC article.
573 results