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Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity.
Shaffer JP, Nothias LF, Thompson LR, Sanders JG, Salido RA, Couvillion SP, Brejnrod AD, Lejzerowicz F, Haiminen N, Huang S, Lutz HL, Zhu Q, Martino C, Morton JT, Karthikeyan S, Nothias-Esposito M, Dührkop K, Böcker S, Kim HW, Aksenov AA, Bittremieux W, Minich JJ, Marotz C, Bryant MM, Sanders K, Schwartz T, Humphrey G, Vásquez-Baeza Y, Tripathi A, Parida L, Carrieri AP, Beck KL, Das P, González A, McDonald D, Ladau J, Karst SM, Albertsen M, Ackermann G, DeReus J, Thomas T, Petras D, Shade A, Stegen J, Song SJ, Metz TO, Swafford AD, Dorrestein PC, Jansson JK, Gilbert JA, Knight R; Earth Microbiome Project 500 (EMP500) Consortium. Shaffer JP, et al. Among authors: duhrkop k. Nat Microbiol. 2022 Dec;7(12):2128-2150. doi: 10.1038/s41564-022-01266-x. Epub 2022 Nov 28. Nat Microbiol. 2022. PMID: 36443458 Free PMC article.
Fast alignment of fragmentation trees.
Hufsky F, Dührkop K, Rasche F, Chimani M, Böcker S. Hufsky F, et al. Among authors: duhrkop k. Bioinformatics. 2012 Jun 15;28(12):i265-73. doi: 10.1093/bioinformatics/bts207. Bioinformatics. 2012. PMID: 22689771 Free PMC article.
Molecular Formula Identification with SIRIUS.
Dührkop K, Scheubert K, Böcker S. Dührkop K, et al. Metabolites. 2013 Jun 13;3(2):506-16. doi: 10.3390/metabo3020506. Metabolites. 2013. PMID: 24958003 Free PMC article.
Fragmentation trees reloaded.
Böcker S, Dührkop K. Böcker S, et al. Among authors: duhrkop k. J Cheminform. 2016 Feb 1;8:5. doi: 10.1186/s13321-016-0116-8. eCollection 2016. J Cheminform. 2016. PMID: 26839597 Free PMC article.
Fast metabolite identification with Input Output Kernel Regression.
Brouard C, Shen H, Dührkop K, d'Alché-Buc F, Böcker S, Rousu J. Brouard C, et al. Among authors: duhrkop k. Bioinformatics. 2016 Jun 15;32(12):i28-i36. doi: 10.1093/bioinformatics/btw246. Bioinformatics. 2016. PMID: 27307628 Free PMC article.
26 results