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The IMG/M data management and analysis system v.7: content updates and new features.
Chen IA, Chu K, Palaniappan K, Ratner A, Huang J, Huntemann M, Hajek P, Ritter SJ, Webb C, Wu D, Varghese NJ, Reddy TBK, Mukherjee S, Ovchinnikova G, Nolan M, Seshadri R, Roux S, Visel A, Woyke T, Eloe-Fadrosh EA, Kyrpides NC, Ivanova NN. Chen IA, et al. Among authors: seshadri r. Nucleic Acids Res. 2023 Jan 6;51(D1):D723-D732. doi: 10.1093/nar/gkac976. Nucleic Acids Res. 2023. PMID: 36382399 Free PMC article.
Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes.
Seshadri R, Roux S, Huber KJ, Wu D, Yu S, Udwary D, Call L, Nayfach S, Hahnke RL, Pukall R, White JR, Varghese NJ, Webb C, Palaniappan K, Reimer LC, Sardà J, Bertsch J, Mukherjee S, Reddy TBK, Hajek PP, Huntemann M, Chen IA, Spunde A, Clum A, Shapiro N, Wu ZY, Zhao Z, Zhou Y, Evtushenko L, Thijs S, Stevens V, Eloe-Fadrosh EA, Mouncey NJ, Yoshikuni Y, Whitman WB, Klenk HP, Woyke T, Göker M, Kyrpides NC, Ivanova NN. Seshadri R, et al. Cell Genom. 2022 Nov 11;2(12):100213. doi: 10.1016/j.xgen.2022.100213. eCollection 2022 Dec 14. Cell Genom. 2022. PMID: 36778052 Free PMC article.
Discovery of a novel filamentous prophage in the genome of the Mimosa pudica microsymbiont Cupriavidus taiwanensis STM 6018.
Klonowska A, Ardley J, Moulin L, Zandberg J, Patrel D, Gollagher M, Marinova D, Reddy TBK, Varghese N, Huntemann M, Woyke T, Seshadri R, Ivanova N, Kyrpides N, Reeve W. Klonowska A, et al. Among authors: seshadri r. Front Microbiol. 2023 Feb 28;14:1082107. doi: 10.3389/fmicb.2023.1082107. eCollection 2023. Front Microbiol. 2023. PMID: 36925474 Free PMC article.
Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908.
Robertson R, Conrad K, Ahuja B, Göker M, Hahnke RL, Spunde A, Ivanova NN, Seshadri R, Stephens C. Robertson R, et al. Among authors: seshadri r. Microbiol Resour Announc. 2023 Oct 19;12(10):e0054823. doi: 10.1128/MRA.00548-23. Epub 2023 Sep 15. Microbiol Resour Announc. 2023. PMID: 37712678 Free PMC article.
Unraveling the functional dark matter through global metagenomics.
Pavlopoulos GA, Baltoumas FA, Liu S, Selvitopi O, Camargo AP, Nayfach S, Azad A, Roux S, Call L, Ivanova NN, Chen IM, Paez-Espino D, Karatzas E; Novel Metagenome Protein Families Consortium; Iliopoulos I, Konstantinidis K, Tiedje JM, Pett-Ridge J, Baker D, Visel A, Ouzounis CA, Ovchinnikov S, Buluç A, Kyrpides NC. Pavlopoulos GA, et al. Nature. 2023 Oct;622(7983):594-602. doi: 10.1038/s41586-023-06583-7. Epub 2023 Oct 11. Nature. 2023. PMID: 37821698 Free PMC article.
Measuring Signs of Atopic Dermatitis in Clinical Practice: A HOME-CP Consensus Statement.
Jacobson ME, Leshem YA, Apfelbacher C, Spuls PI, Gerbens LAA, Thomas KS, Williams HC, Katoh N, Howells L, Schmitt J, Deckert S, Seshadri R, Simpson EL; Harmonising Outcome Measures for Eczema (HOME) initiative. Jacobson ME, et al. Among authors: seshadri r. JAMA Dermatol. 2024 May 22. doi: 10.1001/jamadermatol.2024.1162. Online ahead of print. JAMA Dermatol. 2024. PMID: 38776110
558 results