Giardine BM - Search Results

1

CTCF blocks antisense transcription initiation at divergent promoters.

Luan J, Vermunt MW, Syrett CM, Coté A, Tome JM, Zhang H, Huang A, Luppino JM, Keller CA, Giardine BM, Zhang S, Dunagin MC, Zhang Z, Joyce EF, Lis JT, Raj A, Hardison RC, Blobel GA. Luan J, et al. Among authors: giardine bm. Nat Struct Mol Biol. 2022 Nov;29(11):1136-1144. doi: 10.1038/s41594-022-00855-y. Epub 2022 Nov 11. Nat Struct Mol Biol. 2022. PMID: 36369346 Free PMC article.

2

Databases of human hemoglobin variants and other resources at the globin gene server.

Hardison RC, Chui DH, Riemer C, Giardine B, Lehväslaiho H, Wajcman H, Miller W. Hardison RC, et al. Hemoglobin. 2001 May;25(2):183-93. doi: 10.1081/hem-100104027. Hemoglobin. 2001. PMID: 11480780 Review.

3

HbVar: A relational database of human hemoglobin variants and thalassemia mutations at the globin gene server.

Hardison RC, Chui DH, Giardine B, Riemer C, Patrinos GP, Anagnou N, Miller W, Wajcman H. Hardison RC, et al. Hum Mutat. 2002 Mar;19(3):225-33. doi: 10.1002/humu.10044. Hum Mutat. 2002. PMID: 11857738

4

GALA, a database for genomic sequence alignments and annotations.

Giardine B, Elnitski L, Riemer C, Makalowska I, Schwartz S, Miller W, Hardison RC. Giardine B, et al. Genome Res. 2003 Apr;13(4):732-41. doi: 10.1101/gr.603103. Genome Res. 2003. PMID: 12671007 Free PMC article.

5

Improvements in the HbVar database of human hemoglobin variants and thalassemia mutations for population and sequence variation studies.

Patrinos GP, Giardine B, Riemer C, Miller W, Chui DH, Anagnou NP, Wajcman H, Hardison RC. Patrinos GP, et al. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D537-41. doi: 10.1093/nar/gkh006. Nucleic Acids Res. 2004. PMID: 14681476 Free PMC article.

6

Global predictions and tests of erythroid regulatory regions.

Hardison RC, Chiaromonte F, Kolbe D, Wang H, Petrykowska H, Elnitski L, Yang S, Giardine B, Zhang Y, Riemer C, Schwartz S, Haussler D, Roskin KM, Weber RJ, Diekhans M, Kent WJ, Weiss MJ, Welch J, Miller W. Hardison RC, et al. Cold Spring Harb Symp Quant Biol. 2003;68:335-44. doi: 10.1101/sqb.2003.68.335. Cold Spring Harb Symp Quant Biol. 2003. PMID: 15338635 No abstract available.

7

Improvements to GALA and dbERGE II: databases featuring genomic sequence alignment, annotation and experimental results.

Elnitski L, Giardine B, Shah P, Zhang Y, Riemer C, Weirauch M, Burhans R, Miller W, Hardison RC. Elnitski L, et al. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D466-70. doi: 10.1093/nar/gki045. Nucleic Acids Res. 2005. PMID: 15608239 Free PMC article.

8

Galaxy: a platform for interactive large-scale genome analysis.

Giardine B, Riemer C, Hardison RC, Burhans R, Elnitski L, Shah P, Zhang Y, Blankenberg D, Albert I, Taylor J, Miller W, Kent WJ, Nekrutenko A. Giardine B, et al. Genome Res. 2005 Oct;15(10):1451-5. doi: 10.1101/gr.4086505. Epub 2005 Sep 16. Genome Res. 2005. PMID: 16169926 Free PMC article.

9

HbVar database of human hemoglobin variants and thalassemia mutations: 2007 update.

Giardine B, van Baal S, Kaimakis P, Riemer C, Miller W, Samara M, Kollia P, Anagnou NP, Chui DH, Wajcman H, Hardison RC, Patrinos GP. Giardine B, et al. Hum Mutat. 2007 Feb;28(2):206. doi: 10.1002/humu.9479. Hum Mutat. 2007. PMID: 17221864

10

Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression.

Cheng Y, Wu W, Kumar SA, Yu D, Deng W, Tripic T, King DC, Chen KB, Zhang Y, Drautz D, Giardine B, Schuster SC, Miller W, Chiaromonte F, Zhang Y, Blobel GA, Weiss MJ, Hardison RC. Cheng Y, et al. Genome Res. 2009 Dec;19(12):2172-84. doi: 10.1101/gr.098921.109. Epub 2009 Nov 3. Genome Res. 2009. PMID: 19887574 Free PMC article.

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