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CTCF blocks antisense transcription initiation at divergent promoters.
Luan J, Vermunt MW, Syrett CM, Coté A, Tome JM, Zhang H, Huang A, Luppino JM, Keller CA, Giardine BM, Zhang S, Dunagin MC, Zhang Z, Joyce EF, Lis JT, Raj A, Hardison RC, Blobel GA. Luan J, et al. Among authors: cote a. Nat Struct Mol Biol. 2022 Nov;29(11):1136-1144. doi: 10.1038/s41594-022-00855-y. Epub 2022 Nov 11. Nat Struct Mol Biol. 2022. PMID: 36369346 Free PMC article.
Nanoscale imaging of RNA with expansion microscopy.
Chen F, Wassie AT, Cote AJ, Sinha A, Alon S, Asano S, Daugharthy ER, Chang JB, Marblestone A, Church GM, Raj A, Boyden ES. Chen F, et al. Among authors: cote aj. Nat Methods. 2016 Aug;13(8):679-84. doi: 10.1038/nmeth.3899. Epub 2016 Jul 4. Nat Methods. 2016. PMID: 27376770 Free PMC article.
FISHing Out the Details of CRISPR Genome Tracks.
Coté AJ, Raj A. Coté AJ, et al. Biophys J. 2017 Mar 28;112(6):1045-1046. doi: 10.1016/j.bpj.2017.02.006. Biophys J. 2017. PMID: 28355532 Free PMC article. No abstract available.
Mitotic transcription and waves of gene reactivation during mitotic exit.
Palozola KC, Donahue G, Liu H, Grant GR, Becker JS, Cote A, Yu H, Raj A, Zaret KS. Palozola KC, et al. Among authors: cote a. Science. 2017 Oct 6;358(6359):119-122. doi: 10.1126/science.aal4671. Epub 2017 Sep 14. Science. 2017. PMID: 28912132 Free PMC article.
ClampFISH detects individual nucleic acid molecules using click chemistry-based amplification.
Rouhanifard SH, Mellis IA, Dunagin M, Bayatpour S, Jiang CL, Dardani I, Symmons O, Emert B, Torre E, Cote A, Sullivan A, Stamatoyannopoulos JA, Raj A. Rouhanifard SH, et al. Among authors: cote a. Nat Biotechnol. 2018 Nov 12:10.1038/nbt.4286. doi: 10.1038/nbt.4286. Online ahead of print. Nat Biotechnol. 2018. PMID: 30418432 Free PMC article.
Genetic Variation in Type 1 Diabetes Reconfigures the 3D Chromatin Organization of T Cells and Alters Gene Expression.
Fasolino M, Goldman N, Wang W, Cattau B, Zhou Y, Petrovic J, Link VM, Cote A, Chandra A, Silverman M, Joyce EF, Little SC; HPAP Consortium; Kaestner KH, Naji A, Raj A, Henao-Mejia J, Faryabi RB, Vahedi G. Fasolino M, et al. Among authors: cote a. Immunity. 2020 Feb 18;52(2):257-274.e11. doi: 10.1016/j.immuni.2020.01.003. Epub 2020 Feb 11. Immunity. 2020. PMID: 32049053 Free PMC article.
p53 mediates target gene association with nuclear speckles for amplified RNA expression.
Alexander KA, Coté A, Nguyen SC, Zhang L, Gholamalamdari O, Agudelo-Garcia P, Lin-Shiao E, Tanim KMA, Lim J, Biddle N, Dunagin MC, Good CR, Mendoza MR, Little SC, Belmont A, Joyce EF, Raj A, Berger SL. Alexander KA, et al. Among authors: cote a. Mol Cell. 2021 Apr 15;81(8):1666-1681.e6. doi: 10.1016/j.molcel.2021.03.006. Epub 2021 Apr 5. Mol Cell. 2021. PMID: 33823140 Free PMC article.
432 results