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BepiPred-3.0: Improved B-cell epitope prediction using protein language models.
Protein Sci. 2022 Dec;31(12):e4497. doi: 10.1002/pro.4497.
Protein Sci. 2022.
PMID: 36366745
Free PMC article.
NetSurfP-3.0: accurate and fast prediction of protein structural features by protein language models and deep learning.
Høie MH, Kiehl EN, Petersen B, Nielsen M, Winther O, Nielsen H, Hallgren J, Marcatili P.
Høie MH, et al.
Nucleic Acids Res. 2022 Jul 5;50(W1):W510-W515. doi: 10.1093/nar/gkac439.
Nucleic Acids Res. 2022.
PMID: 35648435
Free PMC article.
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Widespread amyloidogenicity potential of multiple myeloma patient-derived immunoglobulin light chains.
Sternke-Hoffmann R, Pauly T, Norrild RK, Hansen J, Tucholski F, Høie MH, Marcatili P, Dupré M, Duchateau M, Rey M, Malosse C, Metzger S, Boquoi A, Platten F, Egelhaaf SU, Chamot-Rooke J, Fenk R, Nagel-Steger L, Haas R, Buell AK.
Sternke-Hoffmann R, et al. Among authors: hoie mh.
BMC Biol. 2023 Feb 3;21(1):21. doi: 10.1186/s12915-022-01506-w.
BMC Biol. 2023.
PMID: 36737754
Free PMC article.
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Comparative Structure Analysis of the Multi-Domain, Cell Envelope Proteases of Lactic Acid Bacteria.
Christensen LF, Høie MH, Bang-Berthelsen CH, Marcatili P, Hansen EB.
Christensen LF, et al. Among authors: hoie mh.
Microorganisms. 2023 Sep 8;11(9):2256. doi: 10.3390/microorganisms11092256.
Microorganisms. 2023.
PMID: 37764099
Free PMC article.
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DiscoTope-3.0: improved B-cell epitope prediction using inverse folding latent representations.
Høie MH, Gade FS, Johansen JM, Würtzen C, Winther O, Nielsen M, Marcatili P.
Høie MH, et al.
Front Immunol. 2024 Feb 8;15:1322712. doi: 10.3389/fimmu.2024.1322712. eCollection 2024.
Front Immunol. 2024.
PMID: 38390326
Free PMC article.
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Predicting and interpreting large-scale mutagenesis data using analyses of protein stability and conservation.
Høie MH, Cagiada M, Beck Frederiksen AH, Stein A, Lindorff-Larsen K.
Høie MH, et al.
Cell Rep. 2022 Jan 11;38(2):110207. doi: 10.1016/j.celrep.2021.110207.
Cell Rep. 2022.
PMID: 35021073
Free article.
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