Sanches DS - Search Results

1

Genome Mining Reveals High Biosynthetic Potential of Biocontrol Agent Bacillus velezensis B.BV10.

Bertê R, Teixeira GM, de Oliveira JP, Nicoletto MLA, da Silva DV, de Godoy GG, Sanches DS, de Resende JTV, Pereira UP, Nunes da Rocha U, de Oliveira AG. Bertê R, et al. Among authors: sanches ds. Genes (Basel). 2022 Oct 30;13(11):1984. doi: 10.3390/genes13111984. Genes (Basel). 2022. PMID: 36360221 Free PMC article.

2

Draft Genome Sequence of Brevibacillus brevis LABIM17, a Biotechnologically Important Antimicrobial-Producing Bacterium.

de Medeiros Chagas L, Teixeira GM, Mosela M, de Oliveira JP, Nicoletto MLA, Bertê R, da Silva DV, Sanches DS, Brancher JD, Padua UP, de Oliveira AG. de Medeiros Chagas L, et al. Among authors: sanches ds. Microbiol Resour Announc. 2022 Mar 17;11(3):e0000622. doi: 10.1128/mra.00006-22. Epub 2022 Feb 22. Microbiol Resour Announc. 2022. PMID: 35191747 Free PMC article.

3

Antifungal activity and genomic characterization of the biocontrol agent Bacillus velezensis CMRP 4489.

Baptista JP, Teixeira GM, de Jesus MLA, Bertê R, Higashi A, Mosela M, da Silva DV, de Oliveira JP, Sanches DS, Brancher JD, Balbi-Peña MI, de Padua Pereira U, de Oliveira AG. Baptista JP, et al. Among authors: sanches ds. Sci Rep. 2022 Oct 18;12(1):17401. doi: 10.1038/s41598-022-22380-0. Sci Rep. 2022. PMID: 36257999 Free PMC article.

4

Information Theory for Biological Sequence Classification: A Novel Feature Extraction Technique Based on Tsallis Entropy.

Bonidia RP, Avila Santos AP, de Almeida BLS, Stadler PF, Nunes da Rocha U, Sanches DS, de Carvalho ACPLF. Bonidia RP, et al. Among authors: sanches ds. Entropy (Basel). 2022 Oct 1;24(10):1398. doi: 10.3390/e24101398. Entropy (Basel). 2022. PMID: 37420418 Free PMC article.

5

BioDeepfuse: a hybrid deep learning approach with integrated feature extraction techniques for enhanced non-coding RNA classification.

Avila Santos AP, de Almeida BLS, Bonidia RP, Stadler PF, Stefanic P, Mandic-Mulec I, Rocha U, Sanches DS, de Carvalho ACPLF. Avila Santos AP, et al. Among authors: sanches ds. RNA Biol. 2024 Jan;21(1):1-12. doi: 10.1080/15476286.2024.2329451. Epub 2024 Mar 25. RNA Biol. 2024. PMID: 38528797 Free PMC article.

6

BioAutoML: automated feature engineering and metalearning to predict noncoding RNAs in bacteria.

Bonidia RP, Santos APA, de Almeida BLS, Stadler PF, da Rocha UN, Sanches DS, de Carvalho ACPLF. Bonidia RP, et al. Among authors: sanches ds. Brief Bioinform. 2022 Jul 18;23(4):bbac218. doi: 10.1093/bib/bbac218. Brief Bioinform. 2022. PMID: 35753697 Free PMC article.

7

MathFeature: feature extraction package for DNA, RNA and protein sequences based on mathematical descriptors.

Bonidia RP, Domingues DS, Sanches DS, de Carvalho ACPLF. Bonidia RP, et al. Among authors: sanches ds. Brief Bioinform. 2022 Jan 17;23(1):bbab434. doi: 10.1093/bib/bbab434. Brief Bioinform. 2022. PMID: 34750626 Free PMC article.

8

Feature extraction approaches for biological sequences: a comparative study of mathematical features.

Bonidia RP, Sampaio LDH, Domingues DS, Paschoal AR, Lopes FM, de Carvalho ACPLF, Sanches DS. Bonidia RP, et al. Among authors: sanches ds. Brief Bioinform. 2021 Sep 2;22(5):bbab011. doi: 10.1093/bib/bbab011. Brief Bioinform. 2021. PMID: 33585910 Review.

9

MuDoGeR: Multi-Domain Genome recovery from metagenomes made easy.

Rocha U, Coelho Kasmanas J, Kallies R, Saraiva JP, Toscan RB, Štefanič P, Bicalho MF, Borim Correa F, Baştürk MN, Fousekis E, Viana Barbosa LM, Plewka J, Probst AJ, Baldrian P, Stadler PF; CLUE-TERRA Consortium. Rocha U, et al. Mol Ecol Resour. 2024 Feb;24(2):e13904. doi: 10.1111/1755-0998.13904. Epub 2023 Nov 23. Mol Ecol Resour. 2024. PMID: 37994269

10

Sequence motif finder using memetic algorithm.

Caldonazzo Garbelini JM, Kashiwabara AY, Sanches DS. Caldonazzo Garbelini JM, et al. Among authors: sanches ds. BMC Bioinformatics. 2018 Jan 3;19(1):4. doi: 10.1186/s12859-017-2005-1. BMC Bioinformatics. 2018. PMID: 29298679 Free PMC article.

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