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RpoN (sigma factor 54) contributes to bacterial fitness during tracheal colonization of Bordetella bronchiseptica.
Microbiol Immunol. 2024 Feb;68(2):36-46. doi: 10.1111/1348-0421.13109. Epub 2023 Dec 17.
Microbiol Immunol. 2024.
PMID: 38105571
Deciphering the antigen specificities of antibodies by clustering their complementarity determining region sequences.
Saputri DS, Ismanto HS, Nugraha DK, Xu Z, Horiguchi Y, Sakakibara S, Standley DM.
Saputri DS, et al. Among authors: nugraha dk.
mSystems. 2023 Dec 21;8(6):e0072223. doi: 10.1128/msystems.00722-23. Epub 2023 Nov 17.
mSystems. 2023.
PMID: 37975681
Free PMC article.
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DAT, deacylating autotransporter toxin, from Bordetella parapertussis demyristoylates Gαi GTPases and contributes to cough.
Hiramatsu Y, Nishida T, Ota N, Tamaki Y, Nugraha DK, Horiguchi Y.
Hiramatsu Y, et al. Among authors: nugraha dk.
Proc Natl Acad Sci U S A. 2023 Oct 3;120(40):e2308260120. doi: 10.1073/pnas.2308260120. Epub 2023 Sep 25.
Proc Natl Acad Sci U S A. 2023.
PMID: 37748060
Free PMC article.
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Survival of Bordetella bronchiseptica in Acanthamoeba castellanii.
Nugraha DK, Nishida T, Tamaki Y, Hiramatsu Y, Yamaguchi H, Horiguchi Y.
Nugraha DK, et al.
Microbiol Spectr. 2023 Mar 27;11(2):e0048723. doi: 10.1128/spectrum.00487-23. Online ahead of print.
Microbiol Spectr. 2023.
PMID: 36971600
Free PMC article.
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Interference of flagellar rotation up-regulates the expression of small RNA contributing to Bordetella pertussis infection.
Hiramatsu Y, Nishida T, Nugraha DK, Osada-Oka M, Nakane D, Imada K, Horiguchi Y.
Hiramatsu Y, et al. Among authors: nugraha dk.
Sci Adv. 2022 Dec 21;8(51):eade8971. doi: 10.1126/sciadv.ade8971. Epub 2022 Dec 21.
Sci Adv. 2022.
PMID: 36542710
Free PMC article.
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Landscape of infection enhancing antibodies in COVID-19 and healthy donors.
Ismanto HS, Xu Z, Saputri DS, Wilamowski J, Li S, Nugraha DK, Horiguchi Y, Okada M, Arase H, Standley DM.
Ismanto HS, et al. Among authors: nugraha dk.
Comput Struct Biotechnol J. 2022;20:6033-6040. doi: 10.1016/j.csbj.2022.11.001. Epub 2022 Nov 4.
Comput Struct Biotechnol J. 2022.
PMID: 36348766
Free PMC article.
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Melanin Produced by Bordetella parapertussis Confers a Survival Advantage to the Bacterium during Host Infection.
Hiramatsu Y, Nishida T, Nugraha DK, Sugihara F, Horiguchi Y.
Hiramatsu Y, et al. Among authors: nugraha dk.
mSphere. 2021 Oct 27;6(5):e0081921. doi: 10.1128/mSphere.00819-21. Epub 2021 Oct 13.
mSphere. 2021.
PMID: 34643424
Free PMC article.
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