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BIONIC: biological network integration using convolutions.
Forster DT, Li SC, Yashiroda Y, Yoshimura M, Li Z, Isuhuaylas LAV, Itto-Nakama K, Yamanaka D, Ohya Y, Osada H, Wang B, Bader GD, Boone C. Forster DT, et al. Among authors: wang b. Nat Methods. 2022 Oct;19(10):1250-1261. doi: 10.1038/s41592-022-01616-x. Epub 2022 Oct 3. Nat Methods. 2022. PMID: 36192463
Single-cell profiling of healthy human kidney reveals features of sex-based transcriptional programs and tissue-specific immunity.
McEvoy CM, Murphy JM, Zhang L, Clotet-Freixas S, Mathews JA, An J, Karimzadeh M, Pouyabahar D, Su S, Zaslaver O, Röst H, Arambewela R, Liu LY, Zhang S, Lawson KA, Finelli A, Wang B, MacParland SA, Bader GD, Konvalinka A, Crome SQ. McEvoy CM, et al. Among authors: wang b. Nat Commun. 2022 Dec 10;13(1):7634. doi: 10.1038/s41467-022-35297-z. Nat Commun. 2022. PMID: 36496458 Free PMC article.
The multimodality cell segmentation challenge: toward universal solutions.
Ma J, Xie R, Ayyadhury S, Ge C, Gupta A, Gupta R, Gu S, Zhang Y, Lee G, Kim J, Lou W, Li H, Upschulte E, Dickscheid T, de Almeida JG, Wang Y, Han L, Yang X, Labagnara M, Gligorovski V, Scheder M, Rahi SJ, Kempster C, Pollitt A, Espinosa L, Mignot T, Middeke JM, Eckardt JN, Li W, Li Z, Cai X, Bai B, Greenwald NF, Van Valen D, Weisbart E, Cimini BA, Cheung T, Brück O, Bader GD, Wang B. Ma J, et al. Among authors: wang y, wang b. Nat Methods. 2024 Mar 26. doi: 10.1038/s41592-024-02233-6. Online ahead of print. Nat Methods. 2024. PMID: 38532015
A machine-learning approach to human ex vivo lung perfusion predicts transplantation outcomes and promotes organ utilization.
Sage AT, Donahoe LL, Shamandy AA, Mousavi SH, Chao BT, Zhou X, Valero J, Balachandran S, Ali A, Martinu T, Tomlinson G, Del Sorbo L, Yeung JC, Liu M, Cypel M, Wang B, Keshavjee S. Sage AT, et al. Among authors: wang b. Nat Commun. 2023 Aug 9;14(1):4810. doi: 10.1038/s41467-023-40468-7. Nat Commun. 2023. PMID: 37558674 Free PMC article.
Segment anything in medical images.
Ma J, He Y, Li F, Han L, You C, Wang B. Ma J, et al. Among authors: wang b. Nat Commun. 2024 Jan 22;15(1):654. doi: 10.1038/s41467-024-44824-z. Nat Commun. 2024. PMID: 38253604 Free PMC article.
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