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BIONIC: biological network integration using convolutions.
Forster DT, Li SC, Yashiroda Y, Yoshimura M, Li Z, Isuhuaylas LAV, Itto-Nakama K, Yamanaka D, Ohya Y, Osada H, Wang B, Bader GD, Boone C. Forster DT, et al. Among authors: bader gd. Nat Methods. 2022 Oct;19(10):1250-1261. doi: 10.1038/s41592-022-01616-x. Epub 2022 Oct 3. Nat Methods. 2022. PMID: 36192463
A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules.
Tong AH, Drees B, Nardelli G, Bader GD, Brannetti B, Castagnoli L, Evangelista M, Ferracuti S, Nelson B, Paoluzi S, Quondam M, Zucconi A, Hogue CW, Fields S, Boone C, Cesareni G. Tong AH, et al. Among authors: bader gd. Science. 2002 Jan 11;295(5553):321-4. doi: 10.1126/science.1064987. Epub 2001 Dec 13. Science. 2002. PMID: 11743162
Playing tag with the yeast proteome.
Andrews BJ, Bader GD, Boone C. Andrews BJ, et al. Among authors: bader gd. Nat Biotechnol. 2003 Nov;21(11):1297-9. doi: 10.1038/nbt1103-1297. Nat Biotechnol. 2003. PMID: 14595360 No abstract available.
Bayesian modeling of the yeast SH3 domain interactome predicts spatiotemporal dynamics of endocytosis proteins.
Tonikian R, Xin X, Toret CP, Gfeller D, Landgraf C, Panni S, Paoluzi S, Castagnoli L, Currell B, Seshagiri S, Yu H, Winsor B, Vidal M, Gerstein MB, Bader GD, Volkmer R, Cesareni G, Drubin DG, Kim PM, Sidhu SS, Boone C. Tonikian R, et al. Among authors: bader gd. PLoS Biol. 2009 Oct;7(10):e1000218. doi: 10.1371/journal.pbio.1000218. Epub 2009 Oct 20. PLoS Biol. 2009. PMID: 19841731 Free PMC article.
DRYGIN: a database of quantitative genetic interaction networks in yeast.
Koh JL, Ding H, Costanzo M, Baryshnikova A, Toufighi K, Bader GD, Myers CL, Andrews BJ, Boone C. Koh JL, et al. Among authors: bader gd. Nucleic Acids Res. 2010 Jan;38(Database issue):D502-7. doi: 10.1093/nar/gkp820. Epub 2009 Oct 30. Nucleic Acids Res. 2010. PMID: 19880385 Free PMC article.
The genetic landscape of a cell.
Costanzo M, Baryshnikova A, Bellay J, Kim Y, Spear ED, Sevier CS, Ding H, Koh JL, Toufighi K, Mostafavi S, Prinz J, St Onge RP, VanderSluis B, Makhnevych T, Vizeacoumar FJ, Alizadeh S, Bahr S, Brost RL, Chen Y, Cokol M, Deshpande R, Li Z, Lin ZY, Liang W, Marback M, Paw J, San Luis BJ, Shuteriqi E, Tong AH, van Dyk N, Wallace IM, Whitney JA, Weirauch MT, Zhong G, Zhu H, Houry WA, Brudno M, Ragibizadeh S, Papp B, Pál C, Roth FP, Giaever G, Nislow C, Troyanskaya OG, Bussey H, Bader GD, Gingras AC, Morris QD, Kim PM, Kaiser CA, Myers CL, Andrews BJ, Boone C. Costanzo M, et al. Among authors: bader gd. Science. 2010 Jan 22;327(5964):425-31. doi: 10.1126/science.1180823. Science. 2010. PMID: 20093466 Free PMC article.
Quantitative analysis of fitness and genetic interactions in yeast on a genome scale.
Baryshnikova A, Costanzo M, Kim Y, Ding H, Koh J, Toufighi K, Youn JY, Ou J, San Luis BJ, Bandyopadhyay S, Hibbs M, Hess D, Gingras AC, Bader GD, Troyanskaya OG, Brown GW, Andrews B, Boone C, Myers CL. Baryshnikova A, et al. Among authors: bader gd. Nat Methods. 2010 Dec;7(12):1017-24. doi: 10.1038/nmeth.1534. Epub 2010 Nov 14. Nat Methods. 2010. PMID: 21076421 Free PMC article.
Protein complexes are central in the yeast genetic landscape.
Michaut M, Baryshnikova A, Costanzo M, Myers CL, Andrews BJ, Boone C, Bader GD. Michaut M, et al. Among authors: bader gd. PLoS Comput Biol. 2011 Feb;7(2):e1001092. doi: 10.1371/journal.pcbi.1001092. Epub 2011 Feb 24. PLoS Comput Biol. 2011. PMID: 21390331 Free PMC article.
346 results