Zhang MQ - Search Results

1

Prostate Cancer Transcriptomic Regulation by the Interplay of Germline Risk Alleles, Somatic Mutations, and 3D Genomic Architecture.

Yuan J, Houlahan KE, Ramanand SG, Lee S, Baek G, Yang Y, Chen Y, Strand DW, Zhang MQ, Boutros PC, Mani RS. Yuan J, et al. Among authors: zhang mq. Cancer Discov. 2022 Dec 2;12(12):2838-2855. doi: 10.1158/2159-8290.CD-22-0027. Cancer Discov. 2022. PMID: 36108240 Free PMC article.

2

De novo deciphering three-dimensional chromatin interaction and topological domains by wavelet transformation of epigenetic profiles.

Chen Y, Wang Y, Xuan Z, Chen M, Zhang MQ. Chen Y, et al. Among authors: zhang mq. Nucleic Acids Res. 2016 Jun 20;44(11):e106. doi: 10.1093/nar/gkw225. Epub 2016 Apr 7. Nucleic Acids Res. 2016. PMID: 27060148 Free PMC article.

3

CAPTURE: In Situ Analysis of Chromatin Composition of Endogenous Genomic Loci by Biotinylated dCas9.

Liu X, Zhang Y, Chen Y, Li M, Shao Z, Zhang MQ, Xu J. Liu X, et al. Among authors: zhang mq, zhang y. Curr Protoc Mol Biol. 2018 Jul;123(1):e64. doi: 10.1002/cpmb.64. Epub 2018 Jun 19. Curr Protoc Mol Biol. 2018. PMID: 29927077 Free PMC article.

4

Multiplexed capture of spatial configuration and temporal dynamics of locus-specific 3D chromatin by biotinylated dCas9.

Liu X, Chen Y, Zhang Y, Liu Y, Liu N, Botten GA, Cao H, Orkin SH, Zhang MQ, Xu J. Liu X, et al. Among authors: zhang mq, zhang y. Genome Biol. 2020 Mar 5;21(1):59. doi: 10.1186/s13059-020-01973-w. Genome Biol. 2020. PMID: 32138752 Free PMC article.

5

The landscape of RNA polymerase II-associated chromatin interactions in prostate cancer.

Ramanand SG, Chen Y, Yuan J, Daescu K, Lambros MB, Houlahan KE, Carreira S, Yuan W, Baek G, Sharp A, Paschalis A, Kanchwala M, Gao Y, Aslam A, Safdar N, Zhan X, Raj GV, Xing C, Boutros PC, de Bono J, Zhang MQ, Mani RS. Ramanand SG, et al. Among authors: zhang mq. J Clin Invest. 2020 Aug 3;130(8):3987-4005. doi: 10.1172/JCI134260. J Clin Invest. 2020. PMID: 32343676 Free PMC article.

6

Model-based analysis of chromatin interactions from dCas9-Based CAPTURE-3C-seq.

Chen Y, Wang Y, Liu X, Xu J, Zhang MQ. Chen Y, et al. Among authors: zhang mq. PLoS One. 2020 Jul 31;15(7):e0236666. doi: 10.1371/journal.pone.0236666. eCollection 2020. PLoS One. 2020. PMID: 32735574 Free PMC article.

7

Deciphering hierarchical organization of topologically associated domains through change-point testing.

Xing H, Wu Y, Zhang MQ, Chen Y. Xing H, et al. Among authors: zhang mq. BMC Bioinformatics. 2021 Apr 10;22(1):183. doi: 10.1186/s12859-021-04113-8. BMC Bioinformatics. 2021. PMID: 33838653 Free PMC article.

8

Single-cell alternative polyadenylation analysis delineates GABAergic neuron types.

Yang Y, Paul A, Bach TN, Huang ZJ, Zhang MQ. Yang Y, et al. Among authors: zhang mq. BMC Biol. 2021 Jul 23;19(1):144. doi: 10.1186/s12915-021-01076-3. BMC Biol. 2021. PMID: 34301239 Free PMC article.

9

ChIPr: accurate prediction of cohesin-mediated 3D genome organization from 2D chromatin features.

Abbas A, Chandratre K, Gao Y, Yuan J, Zhang MQ, Mani RS. Abbas A, et al. Among authors: zhang mq. Genome Biol. 2024 Jan 12;25(1):15. doi: 10.1186/s13059-023-03158-7. Genome Biol. 2024. PMID: 38217027 Free PMC article.

10

Recurrently deregulated lncRNAs in hepatocellular carcinoma.

Yang Y, Chen L, Gu J, Zhang H, Yuan J, Lian Q, Lv G, Wang S, Wu Y, Yang YT, Wang D, Liu Y, Tang J, Luo G, Li Y, Hu L, Sun X, Wang D, Guo M, Xi Q, Xi J, Wang H, Zhang MQ, Lu ZJ. Yang Y, et al. Among authors: zhang mq, zhang h. Nat Commun. 2017 Feb 13;8:14421. doi: 10.1038/ncomms14421. Nat Commun. 2017. PMID: 28194035 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

673 results

Search Page