Donald BR - Search Results

1

RESISTOR: A New OSPREY Module to Predict Resistance Mutations.

Guerin N, Kaserer T, Donald BR. Guerin N, et al. Among authors: donald br. J Comput Biol. 2022 Dec;29(12):1346-1352. doi: 10.1089/cmb.2022.0254. Epub 2022 Sep 13. J Comput Biol. 2022. PMID: 36099194 Free PMC article.

2

A Bayesian approach for determining protein side-chain rotamer conformations using unassigned NOE data.

Zeng J, Roberts KE, Zhou P, Donald BR. Zeng J, et al. Among authors: donald br. J Comput Biol. 2011 Nov;18(11):1661-79. doi: 10.1089/cmb.2011.0172. Epub 2011 Oct 4. J Comput Biol. 2011. PMID: 21970619 Free PMC article.

3

A geometric arrangement algorithm for structure determination of symmetric protein homo-oligomers from NOEs and RDCs.

Martin JW, Yan AK, Bailey-Kellogg C, Zhou P, Donald BR. Martin JW, et al. Among authors: donald br. J Comput Biol. 2011 Nov;18(11):1507-23. doi: 10.1089/cmb.2011.0173. Epub 2011 Oct 28. J Comput Biol. 2011. PMID: 22035328 Free PMC article.

4

BWM*: A Novel, Provable, Ensemble-based Dynamic Programming Algorithm for Sparse Approximations of Computational Protein Design.

Jou JD, Jain S, Georgiev IS, Donald BR. Jou JD, et al. Among authors: donald br. J Comput Biol. 2016 Jun;23(6):413-24. doi: 10.1089/cmb.2015.0194. Epub 2016 Jan 8. J Comput Biol. 2016. PMID: 26744898 Free PMC article.

5

comets (Constrained Optimization of Multistate Energies by Tree Search): A Provable and Efficient Protein Design Algorithm to Optimize Binding Affinity and Specificity with Respect to Sequence.

Hallen MA, Donald BR. Hallen MA, et al. Among authors: donald br. J Comput Biol. 2016 May;23(5):311-21. doi: 10.1089/cmb.2015.0188. Epub 2016 Jan 13. J Comput Biol. 2016. PMID: 26761641 Free PMC article.

6

cOSPREY: A Cloud-Based Distributed Algorithm for Large-Scale Computational Protein Design.

Pan Y, Dong Y, Zhou J, Hallen M, Donald BR, Zeng J, Xu W. Pan Y, et al. Among authors: donald br. J Comput Biol. 2016 Sep;23(9):737-49. doi: 10.1089/cmb.2015.0234. Epub 2016 May 6. J Comput Biol. 2016. PMID: 27154509 Free PMC article.

7

LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid Rotamer-Like Efficiency.

Hallen MA, Jou JD, Donald BR. Hallen MA, et al. Among authors: donald br. J Comput Biol. 2017 Jun;24(6):536-546. doi: 10.1089/cmb.2016.0136. Epub 2016 Sep 28. J Comput Biol. 2017. PMID: 27681371 Free PMC article.

8

OSPREY Predicts Resistance Mutations Using Positive and Negative Computational Protein Design.

Ojewole A, Lowegard A, Gainza P, Reeve SM, Georgiev I, Anderson AC, Donald BR. Ojewole A, et al. Among authors: donald br. Methods Mol Biol. 2017;1529:291-306. doi: 10.1007/978-1-4939-6637-0_15. Methods Mol Biol. 2017. PMID: 27914058 Free PMC article.

9

BBK* (Branch and Bound Over K*): A Provable and Efficient Ensemble-Based Protein Design Algorithm to Optimize Stability and Binding Affinity Over Large Sequence Spaces.

Ojewole AA, Jou JD, Fowler VG, Donald BR. Ojewole AA, et al. Among authors: donald br. J Comput Biol. 2018 Jul;25(7):726-739. doi: 10.1089/cmb.2017.0267. Epub 2018 Mar 13. J Comput Biol. 2018. PMID: 29641249 Free PMC article.

10

OSPREY 3.0: Open-source protein redesign for you, with powerful new features.

Hallen MA, Martin JW, Ojewole A, Jou JD, Lowegard AU, Frenkel MS, Gainza P, Nisonoff HM, Mukund A, Wang S, Holt GT, Zhou D, Dowd E, Donald BR. Hallen MA, et al. Among authors: donald br. J Comput Chem. 2018 Nov 15;39(30):2494-2507. doi: 10.1002/jcc.25522. Epub 2018 Oct 14. J Comput Chem. 2018. PMID: 30368845 Free PMC article.

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