Palsson BO - Search Results

1

Advanced transcriptomic analysis reveals the role of efflux pumps and media composition in antibiotic responses of Pseudomonas aeruginosa.

Rajput A, Tsunemoto H, Sastry AV, Szubin R, Rychel K, Chauhan SM, Pogliano J, Palsson BO. Rajput A, et al. Among authors: palsson bo. Nucleic Acids Res. 2022 Sep 23;50(17):9675-9688. doi: 10.1093/nar/gkac743. Nucleic Acids Res. 2022. PMID: 36095122 Free PMC article.

2

Sensitive and accurate identification of protein-DNA binding events in ChIP-chip assays using higher order derivative analysis.

Barrett CL, Cho BK, Palsson BO. Barrett CL, et al. Among authors: palsson bo. Nucleic Acids Res. 2011 Mar;39(5):1656-65. doi: 10.1093/nar/gkq848. Epub 2010 Nov 4. Nucleic Acids Res. 2011. PMID: 21051353 Free PMC article.

3

The PurR regulon in Escherichia coli K-12 MG1655.

Cho BK, Federowicz SA, Embree M, Park YS, Kim D, Palsson BØ. Cho BK, et al. Among authors: palsson bo. Nucleic Acids Res. 2011 Aug;39(15):6456-64. doi: 10.1093/nar/gkr307. Epub 2011 May 13. Nucleic Acids Res. 2011. PMID: 21572102 Free PMC article.

4

Deciphering Fur transcriptional regulatory network highlights its complex role beyond iron metabolism in Escherichia coli.

Seo SW, Kim D, Latif H, O'Brien EJ, Szubin R, Palsson BO. Seo SW, et al. Among authors: palsson bo. Nat Commun. 2014 Sep 15;5:4910. doi: 10.1038/ncomms5910. Nat Commun. 2014. PMID: 25222563 Free PMC article.

5

Use of adaptive laboratory evolution to discover key mutations enabling rapid growth of Escherichia coli K-12 MG1655 on glucose minimal medium.

LaCroix RA, Sandberg TE, O'Brien EJ, Utrilla J, Ebrahim A, Guzman GI, Szubin R, Palsson BO, Feist AM. LaCroix RA, et al. Among authors: palsson bo. Appl Environ Microbiol. 2015 Jan;81(1):17-30. doi: 10.1128/AEM.02246-14. Epub 2014 Oct 10. Appl Environ Microbiol. 2015. PMID: 25304508 Free PMC article.

6

The architecture of ArgR-DNA complexes at the genome-scale in Escherichia coli.

Cho S, Cho YB, Kang TJ, Kim SC, Palsson B, Cho BK. Cho S, et al. Nucleic Acids Res. 2015 Mar 31;43(6):3079-88. doi: 10.1093/nar/gkv150. Epub 2015 Mar 3. Nucleic Acids Res. 2015. PMID: 25735747 Free PMC article.

7

A streamlined ribosome profiling protocol for the characterization of microorganisms.

Latif H, Szubin R, Tan J, Brunk E, Lechner A, Zengler K, Palsson BO. Latif H, et al. Among authors: palsson bo. Biotechniques. 2015 Jun 1;58(6):329-32. doi: 10.2144/000114302. eCollection 2015 Jun. Biotechniques. 2015. PMID: 26054770 Free article.

8

Decoding genome-wide GadEWX-transcriptional regulatory networks reveals multifaceted cellular responses to acid stress in Escherichia coli.

Seo SW, Kim D, O'Brien EJ, Szubin R, Palsson BO. Seo SW, et al. Among authors: palsson bo. Nat Commun. 2015 Aug 10;6:7970. doi: 10.1038/ncomms8970. Nat Commun. 2015. PMID: 26258987 Free PMC article.

9

Genome-wide Reconstruction of OxyR and SoxRS Transcriptional Regulatory Networks under Oxidative Stress in Escherichia coli K-12 MG1655.

Seo SW, Kim D, Szubin R, Palsson BO. Seo SW, et al. Among authors: palsson bo. Cell Rep. 2015 Aug 25;12(8):1289-99. doi: 10.1016/j.celrep.2015.07.043. Epub 2015 Aug 13. Cell Rep. 2015. PMID: 26279566 Free article.

10

Multi-omic data integration enables discovery of hidden biological regularities.

Ebrahim A, Brunk E, Tan J, O'Brien EJ, Kim D, Szubin R, Lerman JA, Lechner A, Sastry A, Bordbar A, Feist AM, Palsson BO. Ebrahim A, et al. Among authors: palsson bo. Nat Commun. 2016 Oct 26;7:13091. doi: 10.1038/ncomms13091. Nat Commun. 2016. PMID: 27782110 Free PMC article.

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