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Automatic local resolution-based sharpening of cryo-EM maps.
Ramírez-Aportela E, Vilas JL, Glukhova A, Melero R, Conesa P, Martínez M, Maluenda D, Mota J, Jiménez A, Vargas J, Marabini R, Sexton PM, Carazo JM, Sorzano COS. Ramírez-Aportela E, et al. Bioinformatics. 2020 Feb 1;36(3):765-772. doi: 10.1093/bioinformatics/btz671. Bioinformatics. 2020. PMID: 31504163 Free PMC article.
Using Scipion for stream image processing at Cryo-EM facilities.
Gómez-Blanco J, de la Rosa-Trevín JM, Marabini R, Del Cano L, Jiménez A, Martínez M, Melero R, Majtner T, Maluenda D, Mota J, Rancel Y, Ramírez-Aportela E, Vilas JL, Carroni M, Fleischmann S, Lindahl E, Ashton AW, Basham M, Clare DK, Savage K, Siebert CA, Sharov GG, Sorzano COS, Conesa P, Carazo JM. Gómez-Blanco J, et al. J Struct Biol. 2018 Dec;204(3):457-463. doi: 10.1016/j.jsb.2018.10.001. Epub 2018 Oct 5. J Struct Biol. 2018. PMID: 30296492 Free PMC article.
Flexible workflows for on-the-fly electron-microscopy single-particle image processing using Scipion.
Maluenda D, Majtner T, Horvath P, Vilas JL, Jiménez-Moreno A, Mota J, Ramírez-Aportela E, Sánchez-García R, Conesa P, Del Caño L, Rancel Y, Fonseca Y, Martínez M, Sharov G, García CA, Strelak D, Melero R, Marabini R, Carazo JM, Sorzano COS. Maluenda D, et al. Acta Crystallogr D Struct Biol. 2019 Oct 1;75(Pt 10):882-894. doi: 10.1107/S2059798319011860. Epub 2019 Oct 1. Acta Crystallogr D Struct Biol. 2019. PMID: 31588920 Free PMC article.
Integration of Cryo-EM Model Building Software in Scipion.
Martínez M, Jiménez-Moreno A, Maluenda D, Ramírez-Aportela E, Melero R, Cuervo A, Conesa P, Del Caño L, Fonseca YC, Sánchez-García R, Strelak D, Conesa JJ, Fernández-Giménez E, de Isidro F, Sorzano COS, Carazo JM, Marabini R. Martínez M, et al. J Chem Inf Model. 2020 May 26;60(5):2533-2540. doi: 10.1021/acs.jcim.9b01032. Epub 2020 Feb 11. J Chem Inf Model. 2020. PMID: 31994878 Free article.
Local resolution estimates of cryoEM reconstructions.
Vilas JL, Heymann JB, Tagare HD, Ramirez-Aportela E, Carazo JM, Sorzano C. Vilas JL, et al. Curr Opin Struct Biol. 2020 Oct;64:74-78. doi: 10.1016/j.sbi.2020.06.005. Epub 2020 Jul 7. Curr Opin Struct Biol. 2020. PMID: 32645578 Free PMC article. Review.
Cryo-EM and Single-Particle Analysis with Scipion.
Jiménez-Moreno A, Del Caño L, Martínez M, Ramírez-Aportela E, Cuervo A, Melero R, Sánchez-García R, Strelak D, Fernández-Giménez E, de Isidro-Gómez FP, Herreros D, Conesa P, Fonseca Y, Maluenda D, Jiménez de la Morena J, Macías JR, Losana P, Marabini R, Carazo JM, Sorzano COS. Jiménez-Moreno A, et al. Among authors: ramirez aportela e. J Vis Exp. 2021 May 29;(171). doi: 10.3791/62261. J Vis Exp. 2021. PMID: 34125107
Cryo-EM density maps adjustment for subtraction, consensus and sharpening.
Fernández-Giménez E, Martínez M, Sánchez-García R, Marabini R, Ramírez-Aportela E, Conesa P, Carazo JM, Sorzano COS. Fernández-Giménez E, et al. Among authors: ramirez aportela e. J Struct Biol. 2021 Dec;213(4):107780. doi: 10.1016/j.jsb.2021.107780. Epub 2021 Aug 29. J Struct Biol. 2021. PMID: 34469787 Free article.
35 results