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Page 1
Student Attitudes Contribute to the Effectiveness of a Genomics CURE.
Lopatto D, Rosenwald AG, Burgess RC, Silver Key C, Van Stry M, Wawersik M, DiAngelo JR, Hark AT, Skerritt M, Allen AK, Alvarez C, Anderson S, Arrigo C, Arsham A, Barnard D, Bedard JEJ, Bose I, Braverman JM, Burg MG, Croonquist P, Du C, Dubowsky S, Eisler H, Escobar MA, Foulk M, Giarla T, Glaser RL, Goodman AL, Gosser Y, Haberman A, Hauser C, Hays S, Howell CE, Jemc J, Jones CJ, Kadlec L, Kagey JD, Keller KL, Kennell J, Kleinschmit AJ, Kleinschmit M, Kokan NP, Kopp OR, Laakso MM, Leatherman J, Long LJ, Manier M, Martinez-Cruzado JC, Matos LF, McClellan AJ, McNeil G, Merkhofer E, Mingo V, Mistry H, Mitchell E, Mortimer NT, Myka JL, Nagengast A, Overvoorde P, Paetkau D, Paliulis L, Parrish S, Toering Peters S, Preuss ML, Price JV, Pullen NA, Reinke C, Revie D, Robic S, Roecklein-Canfield JA, Rubin MR, Sadikot T, Sanford JS, Santisteban M, Saville K, Schroeder S, Shaffer CD, Sharif KA, Sklensky DE, Small C, Smith S, Spokony R, Sreenivasan A, Stamm J, Sterne-Marr R, Teeter KC, Thackeray J, Thompson JS, Velazquez-Ulloa N, Wolfe C, Youngblom J, Yowler B, Zhou L, Brennan J, Buhler J, Leung W, Elgin SCR, Reed LK. Lopatto D, et al. Among authors: kagey jd. J Microbiol Biol Educ. 2022 May 16;23(2):e00208-21. doi: 10.1128/jmbe.00208-21. eCollection 2022 Aug. J Microbiol Biol Educ. 2022. PMID: 36061313 Free PMC article.
Facilitating Growth through Frustration: Using Genomics Research in a Course-Based Undergraduate Research Experience.
Lopatto D, Rosenwald AG, DiAngelo JR, Hark AT, Skerritt M, Wawersik M, Allen AK, Alvarez C, Anderson S, Arrigo C, Arsham A, Barnard D, Bazinet C, Bedard JEJ, Bose I, Braverman JM, Burg MG, Burgess RC, Croonquist P, Du C, Dubowsky S, Eisler H, Escobar MA, Foulk M, Furbee E, Giarla T, Glaser RL, Goodman AL, Gosser Y, Haberman A, Hauser C, Hays S, Howell CE, Jemc J, Johnson ML, Jones CJ, Kadlec L, Kagey JD, Keller KL, Kennell J, Key SCS, Kleinschmit AJ, Kleinschmit M, Kokan NP, Kopp OR, Laakso MM, Leatherman J, Long LJ, Manier M, Martinez-Cruzado JC, Matos LF, McClellan AJ, McNeil G, Merkhofer E, Mingo V, Mistry H, Mitchell E, Mortimer NT, Mukhopadhyay D, Myka JL, Nagengast A, Overvoorde P, Paetkau D, Paliulis L, Parrish S, Preuss ML, Price JV, Pullen NA, Reinke C, Revie D, Robic S, Roecklein-Canfield JA, Rubin MR, Sadikot T, Sanford JS, Santisteban M, Saville K, Schroeder S, Shaffer CD, Sharif KA, Sklensky DE, Small C, Smith M, Smith S, Spokony R, Sreenivasan A, Stamm J, Sterne-Marr R, Teeter KC, Thackeray J, Thompson JS, Peters ST, Van Stry M, Velazquez-Ulloa N, Wolfe C, Youngblom J, Yowler B, Zhou L, Brennan J, Buhler J, Leung W, Reed LK, Elgin SCR. Lopatto D, et al. Among authors: kagey jd. J Microbiol Biol Educ. 2020 Feb 28;21(1):21.1.6. doi: 10.1128/jmbe.v21i1.2005. eCollection 2020. J Microbiol Biol Educ. 2020. PMID: 32148609 Free PMC article.
Fly-CURE, a multi-institutional CURE using Drosophila, increases students' confidence, sense of belonging, and persistence in research.
Merkle JA, Devergne O, Kelly SM, Croonquist PA, Evans CJ, Hwalek MA, Straub VL, Hamill DR, Peister A, Puthoff DP, Saville KJ, Siders JL, Villanueva Gonzalez ZJ, Wittke-Thompson JK, Bieser KL, Stamm J, Vrailas-Mortimer AD, Kagey JD. Merkle JA, et al. Among authors: kagey jd. J Microbiol Biol Educ. 2023 Sep 21;24(3):e00245-22. doi: 10.1128/jmbe.00245-22. eCollection 2023 Dec. J Microbiol Biol Educ. 2023. PMID: 38107988 Free PMC article.
Genetic mapping of EgfrL.3.1 in Drosophila melanogaster.
Stamm J, Joshi G, Anderson MA, Bussing K, Houchin C, Elinsky A, Flyte J, Husseini N, Jarosz D, Johnson C, Johnson A, Jones C, Kooner T, Myhre D, Rafaill T, Sayed S, Swan K, Toma J, Kagey J. Stamm J, et al. MicroPubl Biol. 2019 Apr 26;2019:10.17912/micropub.biology.000098. doi: 10.17912/micropub.biology.000098. MicroPubl Biol. 2019. PMID: 32550448 Free PMC article. No abstract available.
Genetic Mapping and Phenotypic Analysis of GstE14 E.4.1 on Eye and Antennae Development in Drosophila melanogaster.
Thomson L, Shah HP, Akinwotu Adewale V, Beise A, Bliayang C, Cioch Z, Craig M, Crump A, Durdan M, Espinosa M, Feda K, Feist J, Fragoso A, Haro G, Hoffman B, Horne P, Houha N, Hounnou S, Inman A, Jakobsze D, Juarez-Morales Y, Khan Y, Kohler J, Lawlor R, Lieser B, Loitz R, Martinez E, Martinez A, Martinez M, Maza B, Mendoza B, Miller S, Mngodo H, O'Shea S, Piane SN, Raivala E, Ruger S, Singer A, Strand JE, Traylor A, Wright A, McCabe S, Pandit SS, Bieser K, Croonquist P, Taylor EE, Wittke-Thompson J, Kagey JD, Devergne O. Thomson L, et al. Among authors: kagey jd. MicroPubl Biol. 2024 Apr 13;2024:10.17912/micropub.biology.001019. doi: 10.17912/micropub.biology.001019. eCollection 2024. MicroPubl Biol. 2024. PMID: 38681673 Free PMC article.
The mapping of Drosophila melanogaster mutant A.4.4.
Bieser K, Stamm J, Aldo A, Bhaskara S, Clairborne M, Coronel Gómez J, Dean R, Dowell A, Dowell E, Eissa M, Fawaz A, Fouad-Meshriky M, Godoy D, Gonzalez K, Hachem M, Hammoud M, Huffman A, Ingram H, Jackman A, Karki B, Khalil N, Khalil H, Ha TK, Kharel A, Kobylarz I, Lomprey H, Lonnberg A, Mahbuba S, Massarani H, Minster M, Molina K, Molitor L, Murray T, Patel P, Pechulis S, Raja A, Rastegari G, Reeves S, Sabu N, Salazar R, Schulert D, Senopole M, Sportiello K, Torres C, Villalobos J, Wu J, Zeigler S, Kagey J. Bieser K, et al. MicroPubl Biol. 2018 Dec 17;2018:10.17912/micropub.biology.000069. doi: 10.17912/micropub.biology.000069. MicroPubl Biol. 2018. PMID: 32550366 Free PMC article. No abstract available.
Genetic mapping of Uba3 O.2.2 , a pupal lethal mutation in Drosophila melanogaster.
Mast E, Bieser KL, Abraham-Villa M, Adams V, Akinlehin AJ, Aquino LZ, Austin JL, Austin AK, Beckham CN, Bengson EJ, Bieszk A, Bogard BL, Brennan RC, Brnot RM, Cirone NJ, Clark MR, Cooper BN, Cruz D, Daprizio KA, DeBoe J, Dencker MM, Donnelly LL, Driscoll L, DuBeau RJ, Durso SW, Ejub A, Elgosbi W, Estrada M, Evins K, Fox PD, France JM, Franco Hernandez MG, Garcia LA, Garl O, Gorsuch MR, Gorzeman-Mohr MA, Grothouse ME, Gubbels ME, Hakemiamjad R, Harvey CV, Hoeppner MA, Ivanov JL, Johnson VM, Johnson JL, Johnson A, Johnston K, Keller KR, Kennedy BT, Killian LR, Klumb M, Koehn OL, Koym AS, Kress KJ, Landis RE, Lewis KN, Lim E, Lopez IK, Lowe D, Luengo Carretero P, Lunaburg G, Mallinder SL, Marshall NA, Mathew J, Mathew J, Mcmanaway HS, Meegan EN, Meyst JD, Miller MJ, Minogue CK, Mohr AA, Moran CI, Moran A, Morris MD, Morrison MD, Moses EA, Mullins CJ, Neri CI, Nichols JM, Nickels BR, Okai AM, Okonmah C, Paramo M, Paramo M, Parker SL, Parmar NK, Paschal J, Patel P, Patel D, Perkins EB, Perry MM, Perry Z, Pollock AA, Portalatin O, Proffitt KS, Queen JT, Quemeneur AC, Richardson AG, Rosenberger K, Rutherford AM, Santos-Perez IX, Sarti CY, Schouweiler LJ, Sessing LM, Setaro SO, Silvestri … See abstract for full author list ➔ Mast E, et al. Among authors: kagey jd. MicroPubl Biol. 2022 Mar 18;2022:10.17912/micropub.biology.000542. doi: 10.17912/micropub.biology.000542. eCollection 2022. MicroPubl Biol. 2022. PMID: 35622528 Free PMC article.
clifford B.4.1 , an allele of CG1603 , causes tissue overgrowth in the Drosophila melanogaster eye.
Nowaskie RR, Kitch A, Adams A, Anandaraj A, Apawan E, Bañuelos L, Betz CJ, Bogunia JM, Buechlein N, Burns MR, Collier HA, Collins Z, Combs K, Dakarian VD, Daniel A, De Jesus Iii CM, Erickson JD, Estrada B, Estrada K, Fields S, Gabriel M, Garcia RM, Gitamo S, Granath E, Hardin SN, Hattling E, Henriquez AV, Hernandez D, Johnson L, Kim AH, Kolley LK, Larue KM, Lockwood E, Longoria N, Lopez C, Lopez-Roca Fernandez RC, Lozano S, Manthie C, May T, Mehrzad Z, Mendoza I, Mohan S, Mounthachak C, Muyizere M, Myers MR, Newton J, Nwawueze A, Paredes AJ, Pezdek MN, Phat Nguyen H, Pobuda N, Sadat S, Sailor JJ, Santiago D, Sbarbaro M, Schultz Iii DE, Senobari AN, Shouse EM, Snarski SM, Solano E, Solis Campos N, Stewart E, Szczepaniak J, Tejeda M, Teoli DF, Tran M, Trivedi N, Uribe Aristizabal L, Vargas BZ, Walker Iii KW, Wasiqi J, Wong J, Zachrel A, Shah HP, Small E, Watts CT, Croonquist P, Devergne O, Jones AK, Taylor EE, Kagey JD, Merkle JA. Nowaskie RR, et al. Among authors: kagey jd. MicroPubl Biol. 2023 Aug 22;2023:10.17912/micropub.biology.000936. doi: 10.17912/micropub.biology.000936. eCollection 2023. MicroPubl Biol. 2023. PMID: 37680216 Free PMC article.
Genetic mapping of the p47 L.3.2 mutation in Drosophilamelanogaster.
Cordes CN, Gouge MM, Morgan H, Porter C, Siders J, Bacab E, Barin B, Becerra IA, Castillo J, Church J, Condo-Hicks S, Conroy KJ, Curbelo-Navarro I, DePrest BJ, Eady A, Edmead T, Farouk V, Flores-Torres A, Girmai M, Gutierrez Navarro CI, Guzman S, Harris AB, Healy K, Jaafar A, Khadr A, Kiboi MN, Korte SN, Lopez C, Mahdi H, Mendoza Avalos J, Miranda K, Patel D, Lopez C, Mahdi H, Mendoza Avalos J, Miranda K, Patel D, Patel R, Pechulis S, Plachta V, Rhodes K, Sandoval AM, Thomas C, Valadez-Mendoza JA, Vora H, Yousif J, Bieser KL, Kagey JD. Cordes CN, et al. Among authors: kagey jd. MicroPubl Biol. 2023 Sep 18;2023:10.17912/micropub.biology.000783. doi: 10.17912/micropub.biology.000783. eCollection 2023. MicroPubl Biol. 2023. PMID: 37799208 Free PMC article.
Complete Genome Sequences of Cluster A Mycobacteriophages BobSwaget, Fred313, KADY, Lokk, MyraDee, Stagni, and StepMih.
Butela KA, Gurney SMR, Hendrickson HL, LeBlanc-Straceski JM, Zimmerman AM, Conant SB, Freed NE, Silander OK, Thomson JJ, Berkes CA, Bertolez C, Davies CG, Elinsky A, Hanlon AJ, Nersesyan J, Patel P, Sherwood J, Tieu Ngo T, Wisniewski KA, Yacoo K, Arendse PM, Bowlen NW, Cunmulaj J, Downs JL, Ferrenberg CA, Gassman AE, Gilligan CER, Gorkiewicz E, Harness C, Huffman A, Jones C, Julien A, Kupic AE, Latu SF, Manning TJ, Maxwell D; Merrimack College SEA-PHAGES Annotators 2016; Meyer CE, Reardon M, Slaughter M, Swasey R, Tennent RI, Torres V, Waller T, Worcester RM, Yost BL, Cresawn SG, Garlena RA, Jacobs-Sera D, Pope WH, Russell DA, Hatfull GF, Kagey JD. Butela KA, et al. Among authors: kagey jd. Genome Announc. 2017 Oct 26;5(43):e01182-17. doi: 10.1128/genomeA.01182-17. Genome Announc. 2017. PMID: 29074662 Free PMC article.
26 results