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Crowdsourced benchmarking of taxonomic metagenome profilers: lessons learned from the sbv IMPROVER Microbiomics challenge.
Poussin C, Khachatryan L, Sierro N, Narsapuram VK, Meyer F, Kaikala V, Chawla V, Muppirala U, Kumar S, Belcastro V, Battey JND, Scotti E, Boué S, McHardy AC, Peitsch MC, Ivanov NV, Hoeng J. Poussin C, et al. Among authors: boue s. BMC Genomics. 2022 Aug 30;23(1):624. doi: 10.1186/s12864-022-08803-2. BMC Genomics. 2022. PMID: 36042406 Free PMC article.
Reputation-based collaborative network biology.
sbv IMPROVER Project Team; Binder J, Boue S, Di Fabio A, Fields RB, Hayes W, Hoeng J, Park JS, Peitsch MC. sbv IMPROVER Project Team, et al. Among authors: boue s. Pac Symp Biocomput. 2015:270-81. Pac Symp Biocomput. 2015. PMID: 25592588 Free article.
The sbv IMPROVER Systems Toxicology Computational Challenge: Identification of Human and Species-Independent Blood Response Markers as Predictors of Smoking Exposure and Cessation Status.
Belcastro V, Poussin C, Xiang Y, Giordano M, Tripathi KP, Boda A, Boué S, Guarracino M, Martin F, Peitsch MC, Hoeng J, Romero R, Tarca AL, Duan Z, Yang H, Gong X, Wang P, Zhang C, Yang W, Sarac OS, Bilgen I, Balci AT, Kumar R, Dhanda SK. Belcastro V, et al. Among authors: boue s. Comput Toxicol. 2018 Feb;5:38-51. doi: 10.1016/j.comtox.2017.07.004. Epub 2017 Jul 14. Comput Toxicol. 2018. PMID: 30221212 Free PMC article.
A vascular biology network model focused on inflammatory processes to investigate atherogenesis and plaque instability.
De León H, Boué S, Schlage WK, Boukharov N, Westra JW, Gebel S, VanHooser A, Talikka M, Fields RB, Veljkovic E, Peck MJ, Mathis C, Hoang V, Poussin C, Deehan R, Stolle K, Hoeng J, Peitsch MC. De León H, et al. Among authors: boue s. J Transl Med. 2014 Jun 26;12:185. doi: 10.1186/1479-5876-12-185. J Transl Med. 2014. PMID: 24965703 Free PMC article.
Transcriptional profiling and targeted proteomics reveals common molecular changes associated with cigarette smoke-induced lung emphysema development in five susceptible mouse strains.
Cabanski M, Fields B, Boue S, Boukharov N, DeLeon H, Dror N, Geertz M, Guedj E, Iskandar A, Kogel U, Merg C, Peck MJ, Poussin C, Schlage WK, Talikka M, Ivanov NV, Hoeng J, Peitsch MC. Cabanski M, et al. Among authors: boue s. Inflamm Res. 2015 Jul;64(7):471-86. doi: 10.1007/s00011-015-0820-2. Epub 2015 May 12. Inflamm Res. 2015. PMID: 25962837 Free PMC article.
The species translation challenge-a systems biology perspective on human and rat bronchial epithelial cells.
Poussin C, Mathis C, Alexopoulos LG, Messinis DE, Dulize RH, Belcastro V, Melas IN, Sakellaropoulos T, Rhrissorrakrai K, Bilal E, Meyer P, Talikka M, Boué S, Norel R, Rice JJ, Stolovitzky G, Ivanov NV, Peitsch MC, Hoeng J. Poussin C, et al. Among authors: boue s. Sci Data. 2014 Jun 10;1:140009. doi: 10.1038/sdata.2014.9. eCollection 2014. Sci Data. 2014. PMID: 25977767 Free PMC article.
127 results