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Bayesian Proteoform Modeling Improves Protein Quantification of Global Proteomic Measurements.
Webb-Robertson BJ, Matzke MM, Datta S, Payne SH, Kang J, Bramer LM, Nicora CD, Shukla AK, Metz TO, Rodland KD, Smith RD, Tardiff MF, McDermott JE, Pounds JG, Waters KM. Webb-Robertson BJ, et al. Among authors: bramer lm. Mol Cell Proteomics. 2014 Aug 16:mcp.O113.030932. doi: 10.1074/mcp.O113.030932. Online ahead of print. Mol Cell Proteomics. 2014. PMID: 25129695 Free article.
Bayesian proteoform modeling improves protein quantification of global proteomic measurements.
Webb-Robertson BJ, Matzke MM, Datta S, Payne SH, Kang J, Bramer LM, Nicora CD, Shukla AK, Metz TO, Rodland KD, Smith RD, Tardiff MF, McDermott JE, Pounds JG, Waters KM. Webb-Robertson BJ, et al. Among authors: bramer lm. Mol Cell Proteomics. 2014 Dec;13(12):3639-46. doi: 10.1074/mcp.M113.030932. Mol Cell Proteomics. 2014. PMID: 25433089 Free PMC article.
Quality Control Analysis in Real-time (QC-ART): A Tool for Real-time Quality Control Assessment of Mass Spectrometry-based Proteomics Data.
Stanfill BA, Nakayasu ES, Bramer LM, Thompson AM, Ansong CK, Clauss TR, Gritsenko MA, Monroe ME, Moore RJ, Orton DJ, Piehowski PD, Schepmoes AA, Smith RD, Webb-Robertson BM, Metz TO; TEDDY Study Group. Stanfill BA, et al. Among authors: bramer lm. Mol Cell Proteomics. 2018 Sep;17(9):1824-1836. doi: 10.1074/mcp.RA118.000648. Epub 2018 Apr 17. Mol Cell Proteomics. 2018. PMID: 29666158 Free PMC article.
pmartR: Quality Control and Statistics for Mass Spectrometry-Based Biological Data.
Stratton KG, Webb-Robertson BM, McCue LA, Stanfill B, Claborne D, Godinez I, Johansen T, Thompson AM, Burnum-Johnson KE, Waters KM, Bramer LM. Stratton KG, et al. Among authors: bramer lm. J Proteome Res. 2019 Mar 1;18(3):1418-1425. doi: 10.1021/acs.jproteome.8b00760. Epub 2019 Jan 28. J Proteome Res. 2019. PMID: 30638385 Free PMC article.
P-Mart: Interactive Analysis of Ion Abundance Global Proteomics Data.
Bramer LM, Stratton KG, White AM, Bleeker AH, Kobold MA, Waters KM, Metz TO, Rodland KD, Webb-Robertson BM. Bramer LM, et al. J Proteome Res. 2019 Mar 1;18(3):1426-1432. doi: 10.1021/acs.jproteome.8b00840. Epub 2019 Feb 6. J Proteome Res. 2019. PMID: 30667224 Free PMC article.
Human Gut Microbiota from Autism Spectrum Disorder Promote Behavioral Symptoms in Mice.
Sharon G, Cruz NJ, Kang DW, Gandal MJ, Wang B, Kim YM, Zink EM, Casey CP, Taylor BC, Lane CJ, Bramer LM, Isern NG, Hoyt DW, Noecker C, Sweredoski MJ, Moradian A, Borenstein E, Jansson JK, Knight R, Metz TO, Lois C, Geschwind DH, Krajmalnik-Brown R, Mazmanian SK. Sharon G, et al. Among authors: bramer lm. Cell. 2019 May 30;177(6):1600-1618.e17. doi: 10.1016/j.cell.2019.05.004. Cell. 2019. PMID: 31150625 Free PMC article.
Metaphenomic Responses of a Native Prairie Soil Microbiome to Moisture Perturbations.
Roy Chowdhury T, Lee JY, Bottos EM, Brislawn CJ, White RA 3rd, Bramer LM, Brown J, Zucker JD, Kim YM, Jumpponen A, Rice CW, Fansler SJ, Metz TO, McCue LA, Callister SJ, Song HS, Jansson JK. Roy Chowdhury T, et al. Among authors: bramer lm. mSystems. 2019 Jun 11;4(4):e00061-19. doi: 10.1128/mSystems.00061-19. mSystems. 2019. PMID: 31186334 Free PMC article.
Extending Classification Algorithms to Case-Control Studies.
Stanfill B, Reehl S, Bramer L, Nakayasu ES, Rich SS, Metz TO, Rewers M, Webb-Robertson BJ; TEDDY Study Group. Stanfill B, et al. Biomed Eng Comput Biol. 2019 Jul 15;10:1179597219858954. doi: 10.1177/1179597219858954. eCollection 2019. Biomed Eng Comput Biol. 2019. PMID: 31320812 Free PMC article.
78 results