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FAIR data pipeline: provenance-driven data management for traceable scientific workflows.
Mitchell SN, Lahiff A, Cummings N, Hollocombe J, Boskamp B, Field R, Reddyhoff D, Zarebski K, Wilson A, Viola B, Burke M, Archibald B, Bessell P, Blackwell R, Boden LA, Brett A, Brett S, Dundas R, Enright J, Gonzalez-Beltran AN, Harris C, Hinder I, David Hughes C, Knight M, Mano V, McMonagle C, Mellor D, Mohr S, Marion G, Matthews L, McKendrick IJ, Mark Pooley C, Porphyre T, Reeves A, Townsend E, Turner R, Walton J, Reeve R. Mitchell SN, et al. Among authors: gonzalez beltran an. Philos Trans A Math Phys Eng Sci. 2022 Oct 3;380(2233):20210300. doi: 10.1098/rsta.2021.0300. Epub 2022 Aug 15. Philos Trans A Math Phys Eng Sci. 2022. PMID: 35965468 Free PMC article.
PhenoMeNal: processing and analysis of metabolomics data in the cloud.
Peters K, Bradbury J, Bergmann S, Capuccini M, Cascante M, de Atauri P, Ebbels TMD, Foguet C, Glen R, Gonzalez-Beltran A, Günther UL, Handakas E, Hankemeier T, Haug K, Herman S, Holub P, Izzo M, Jacob D, Johnson D, Jourdan F, Kale N, Karaman I, Khalili B, Emami Khonsari P, Kultima K, Lampa S, Larsson A, Ludwig C, Moreno P, Neumann S, Novella JA, O'Donovan C, Pearce JTM, Peluso A, Piras ME, Pireddu L, Reed MAC, Rocca-Serra P, Roger P, Rosato A, Rueedi R, Ruttkies C, Sadawi N, Salek RM, Sansone SA, Selivanov V, Spjuth O, Schober D, Thévenot EA, Tomasoni M, van Rijswijk M, van Vliet M, Viant MR, Weber RJM, Zanetti G, Steinbeck C. Peters K, et al. Gigascience. 2019 Feb 1;8(2):giy149. doi: 10.1093/gigascience/giy149. Gigascience. 2019. PMID: 30535405 Free PMC article.
Interoperable and scalable data analysis with microservices: applications in metabolomics.
Emami Khoonsari P, Moreno P, Bergmann S, Burman J, Capuccini M, Carone M, Cascante M, de Atauri P, Foguet C, Gonzalez-Beltran AN, Hankemeier T, Haug K, He S, Herman S, Johnson D, Kale N, Larsson A, Neumann S, Peters K, Pireddu L, Rocca-Serra P, Roger P, Rueedi R, Ruttkies C, Sadawi N, Salek RM, Sansone SA, Schober D, Selivanov V, Thévenot EA, van Vliet M, Zanetti G, Steinbeck C, Kultima K, Spjuth O. Emami Khoonsari P, et al. Among authors: gonzalez beltran an. Bioinformatics. 2019 Oct 1;35(19):3752-3760. doi: 10.1093/bioinformatics/btz160. Bioinformatics. 2019. PMID: 30851093 Free PMC article.
DATS, the data tag suite to enable discoverability of datasets.
Sansone SA, Gonzalez-Beltran A, Rocca-Serra P, Alter G, Grethe JS, Xu H, Fore IM, Lyle J, Gururaj AE, Chen X, Kim HE, Zong N, Li Y, Liu R, Ozyurt IB, Ohno-Machado L. Sansone SA, et al. Sci Data. 2017 Jun 6;4:170059. doi: 10.1038/sdata.2017.59. Sci Data. 2017. PMID: 28585923 Free PMC article.
DataMed - an open source discovery index for finding biomedical datasets.
Chen X, Gururaj AE, Ozyurt B, Liu R, Soysal E, Cohen T, Tiryaki F, Li Y, Zong N, Jiang M, Rogith D, Salimi M, Kim HE, Rocca-Serra P, Gonzalez-Beltran A, Farcas C, Johnson T, Margolis R, Alter G, Sansone SA, Fore IM, Ohno-Machado L, Grethe JS, Xu H. Chen X, et al. J Am Med Inform Assoc. 2018 Mar 1;25(3):300-308. doi: 10.1093/jamia/ocx121. J Am Med Inform Assoc. 2018. PMID: 29346583 Free PMC article.
Ten simple rules for making a vocabulary FAIR.
Cox SJD, Gonzalez-Beltran AN, Magagna B, Marinescu MC. Cox SJD, et al. Among authors: gonzalez beltran an. PLoS Comput Biol. 2021 Jun 16;17(6):e1009041. doi: 10.1371/journal.pcbi.1009041. eCollection 2021 Jun. PLoS Comput Biol. 2021. PMID: 34133421 Free PMC article.
Fostering global data sharing: highlighting the recommendations of the Research Data Alliance COVID-19 working group.
Austin CC, Bernier A, Bezuidenhout L, Bicarregui J, Biro T, Cambon-Thomsen A, Carroll SR, Cournia Z, Dabrowski PW, Diallo G, Duflot T, Garcia L, Gesing S, Gonzalez-Beltran A, Gururaj A, Harrower N, Lin D, Medeiros C, Méndez E, Meyers N, Mietchen D, Nagrani R, Nilsonne G, Parker S, Pickering B, Pienta A, Polydoratou P, Psomopoulos F, Rennes S, Rowe R, Sansone SA, Shanahan H, Sitz L, Stocks J, Tovani-Palone MR, Uhlmansiek M; Research Data Alliance. Austin CC, et al. Wellcome Open Res. 2021 May 26;5:267. doi: 10.12688/wellcomeopenres.16378.2. eCollection 2020. Wellcome Open Res. 2021. PMID: 33501381 Free PMC article.
44 results