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Clustering short time series gene expression data.
Ernst J, Nau GJ, Bar-Joseph Z. Ernst J, et al. Bioinformatics. 2005 Jun;21 Suppl 1:i159-68. doi: 10.1093/bioinformatics/bti1022. Bioinformatics. 2005. PMID: 15961453
Combined analysis reveals a core set of cycling genes.
Lu Y, Mahony S, Benos PV, Rosenfeld R, Simon I, Breeden LL, Bar-Joseph Z. Lu Y, et al. Genome Biol. 2007;8(7):R146. doi: 10.1186/gb-2007-8-7-r146. Genome Biol. 2007. PMID: 17650318 Free PMC article.
Extracting dynamics from static cancer expression data.
Gupta A, Bar-Joseph Z. Gupta A, et al. IEEE/ACM Trans Comput Biol Bioinform. 2008 Apr-Jun;5(2):172-82. doi: 10.1109/TCBB.2007.70233. IEEE/ACM Trans Comput Biol Bioinform. 2008. PMID: 18451427
Cross species analysis of microarray expression data.
Lu Y, Huggins P, Bar-Joseph Z. Lu Y, et al. Bioinformatics. 2009 Jun 15;25(12):1476-83. doi: 10.1093/bioinformatics/btp247. Epub 2009 Apr 8. Bioinformatics. 2009. PMID: 19357096 Free PMC article. Review.
De novo ChIP-seq analysis.
He X, Cicek AE, Wang Y, Schulz MH, Le HS, Bar-Joseph Z. He X, et al. Genome Biol. 2015 Sep 23;16(1):205. doi: 10.1186/s13059-015-0756-4. Genome Biol. 2015. PMID: 26400819 Free PMC article.
152 results