Gentles AJ - Search Results

1

Identification of cell types in multiplexed in situ images by combining protein expression and spatial information using CELESTA.

Zhang W, Li I, Reticker-Flynn NE, Good Z, Chang S, Samusik N, Saumyaa S, Li Y, Zhou X, Liang R, Kong CS, Le QT, Gentles AJ, Sunwoo JB, Nolan GP, Engleman EG, Plevritis SK. Zhang W, et al. Among authors: gentles aj. Nat Methods. 2022 Jun;19(6):759-769. doi: 10.1038/s41592-022-01498-z. Epub 2022 Jun 2. Nat Methods. 2022. PMID: 35654951 Free PMC article.

2

Genomic and proteomic analysis reveals a threshold level of MYC required for tumor maintenance.

Shachaf CM, Gentles AJ, Elchuri S, Sahoo D, Soen Y, Sharpe O, Perez OD, Chang M, Mitchel D, Robinson WH, Dill D, Nolan GP, Plevritis SK, Felsher DW. Shachaf CM, et al. Among authors: gentles aj. Cancer Res. 2008 Jul 1;68(13):5132-42. doi: 10.1158/0008-5472.CAN-07-6192. Cancer Res. 2008. PMID: 18593912 Free PMC article.

3

Boolean implication networks derived from large scale, whole genome microarray datasets.

Sahoo D, Dill DL, Gentles AJ, Tibshirani R, Plevritis SK. Sahoo D, et al. Among authors: gentles aj. Genome Biol. 2008 Oct 30;9(10):R157. doi: 10.1186/gb-2008-9-10-r157. Genome Biol. 2008. PMID: 18973690 Free PMC article.

4

Fast calculation of pairwise mutual information for gene regulatory network reconstruction.

Qiu P, Gentles AJ, Plevritis SK. Qiu P, et al. Among authors: gentles aj. Comput Methods Programs Biomed. 2009 May;94(2):177-80. doi: 10.1016/j.cmpb.2008.11.003. Epub 2009 Jan 22. Comput Methods Programs Biomed. 2009. PMID: 19167129

5

A pluripotency signature predicts histologic transformation and influences survival in follicular lymphoma patients.

Gentles AJ, Alizadeh AA, Lee SI, Myklebust JH, Shachaf CM, Shahbaba B, Levy R, Koller D, Plevritis SK. Gentles AJ, et al. Blood. 2009 Oct 8;114(15):3158-66. doi: 10.1182/blood-2009-02-202465. Epub 2009 Jul 27. Blood. 2009. PMID: 19636063 Free PMC article.

6

Characterization of patient specific signaling via augmentation of Bayesian networks with disease and patient state nodes.

Sachs K, Gentles AJ, Youland R, Itani S, Irish J, Nolan GP, Plevritis SK. Sachs K, et al. Among authors: gentles aj. Annu Int Conf IEEE Eng Med Biol Soc. 2009;2009:6624-7. doi: 10.1109/IEMBS.2009.5332563. Annu Int Conf IEEE Eng Med Biol Soc. 2009. PMID: 19963681 Free PMC article.

7

Reducing the computational complexity of information theoretic approaches for reconstructing gene regulatory networks.

Qiu P, Gentles AJ, Plevritis SK. Qiu P, et al. Among authors: gentles aj. J Comput Biol. 2010 Feb;17(2):169-76. doi: 10.1089/cmb.2009.0052. J Comput Biol. 2010. PMID: 20078227 Free PMC article.

8

Association of a leukemic stem cell gene expression signature with clinical outcomes in acute myeloid leukemia.

Gentles AJ, Plevritis SK, Majeti R, Alizadeh AA. Gentles AJ, et al. JAMA. 2010 Dec 22;304(24):2706-15. doi: 10.1001/jama.2010.1862. JAMA. 2010. PMID: 21177505 Free PMC article.

9

Discovering biological progression underlying microarray samples.

Qiu P, Gentles AJ, Plevritis SK. Qiu P, et al. Among authors: gentles aj. PLoS Comput Biol. 2011 Apr;7(4):e1001123. doi: 10.1371/journal.pcbi.1001123. Epub 2011 Apr 14. PLoS Comput Biol. 2011. PMID: 21533210 Free PMC article.

10

Prediction of survival in diffuse large B-cell lymphoma based on the expression of 2 genes reflecting tumor and microenvironment.

Alizadeh AA, Gentles AJ, Alencar AJ, Liu CL, Kohrt HE, Houot R, Goldstein MJ, Zhao S, Natkunam Y, Advani RH, Gascoyne RD, Briones J, Tibshirani RJ, Myklebust JH, Plevritis SK, Lossos IS, Levy R. Alizadeh AA, et al. Among authors: gentles aj. Blood. 2011 Aug 4;118(5):1350-8. doi: 10.1182/blood-2011-03-345272. Epub 2011 Jun 13. Blood. 2011. PMID: 21670469 Free PMC article.

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