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A chromosome-level, haplotype-phased Vanilla planifolia genome highlights the challenge of partial endoreplication for accurate whole-genome assembly.
Piet Q, Droc G, Marande W, Sarah G, Bocs S, Klopp C, Bourge M, Siljak-Yakovlev S, Bouchez O, Lopez-Roques C, Lepers-Andrzejewski S, Bourgois L, Zucca J, Dron M, Besse P, Grisoni M, Jourda C, Charron C. Piet Q, et al. Among authors: klopp c. Plant Commun. 2022 Sep 12;3(5):100330. doi: 10.1016/j.xplc.2022.100330. Epub 2022 May 5. Plant Commun. 2022. PMID: 35617961 Free PMC article.
Fine mapping of complex traits in non-model species: using next generation sequencing and advanced intercross lines in Japanese quail.
Frésard L, Leroux S, Dehais P, Servin B, Gilbert H, Bouchez O, Klopp C, Cabau C, Vignoles F, Feve K, Ricros A, Gourichon D, Diot C, Richard S, Leterrier C, Beaumont C, Vignal A, Minvielle F, Pitel F. Frésard L, et al. Among authors: klopp c. BMC Genomics. 2012 Oct 15;13:551. doi: 10.1186/1471-2164-13-551. BMC Genomics. 2012. PMID: 23066875 Free PMC article.
Ten steps to get started in Genome Assembly and Annotation.
Dominguez Del Angel V, Hjerde E, Sterck L, Capella-Gutierrez S, Notredame C, Vinnere Pettersson O, Amselem J, Bouri L, Bocs S, Klopp C, Gibrat JF, Vlasova A, Leskosek BL, Soler L, Binzer-Panchal M, Lantz H. Dominguez Del Angel V, et al. Among authors: klopp c. F1000Res. 2018 Feb 5;7:ELIXIR-148. doi: 10.12688/f1000research.13598.1. eCollection 2018. F1000Res. 2018. PMID: 29568489 Free PMC article.
Characterization of a Y-specific duplication/insertion of the anti-Mullerian hormone type II receptor gene based on a chromosome-scale genome assembly of yellow perch, Perca flavescens.
Feron R, Zahm M, Cabau C, Klopp C, Roques C, Bouchez O, Eché C, Valière S, Donnadieu C, Haffray P, Bestin A, Morvezen R, Acloque H, Euclide PT, Wen M, Jouano E, Schartl M, Postlethwait JH, Schraidt C, Christie MR, Larson WA, Herpin A, Guiguen Y. Feron R, et al. Among authors: klopp c. Mol Ecol Resour. 2020 Mar;20(2):531-543. doi: 10.1111/1755-0998.13133. Epub 2020 Jan 27. Mol Ecol Resour. 2020. PMID: 31903688 Free PMC article.
Genome Sequence of the Euryhaline Javafish Medaka, Oryzias javanicus: A Small Aquarium Fish Model for Studies on Adaptation to Salinity.
Takehana Y, Zahm M, Cabau C, Klopp C, Roques C, Bouchez O, Donnadieu C, Barrachina C, Journot L, Kawaguchi M, Yasumasu S, Ansai S, Naruse K, Inoue K, Shinzato C, Schartl M, Guiguen Y, Herpin A. Takehana Y, et al. Among authors: klopp c. G3 (Bethesda). 2020 Mar 5;10(3):907-915. doi: 10.1534/g3.119.400725. G3 (Bethesda). 2020. PMID: 31988161 Free PMC article.
261 results