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Analysing and meta-analysing time-series data of microbial growth and gene expression from plate readers.
PLoS Comput Biol. 2022 May 26;18(5):e1010138. doi: 10.1371/journal.pcbi.1010138. eCollection 2022 May.
PLoS Comput Biol. 2022.
PMID: 35617352
Free PMC article.
Distributed and dynamic intracellular organization of extracellular information.
Granados AA, Pietsch JMJ, Cepeda-Humerez SA, Farquhar IL, Tkačik G, Swain PS.
Granados AA, et al. Among authors: farquhar il.
Proc Natl Acad Sci U S A. 2018 Jun 5;115(23):6088-6093. doi: 10.1073/pnas.1716659115. Epub 2018 May 21.
Proc Natl Acad Sci U S A. 2018.
PMID: 29784812
Free PMC article.
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Determining growth rates from bright-field images of budding cells through identifying overlaps.
Pietsch JMJ, Muñoz AF, Adjavon DA, Farquhar I, Clark IBN, Swain PS.
Pietsch JMJ, et al.
Elife. 2023 Jul 7;12:e79812. doi: 10.7554/eLife.79812.
Elife. 2023.
PMID: 37417869
Free PMC article.
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A high resolution atlas of gene expression in the domestic sheep (Ovis aries).
Clark EL, Bush SJ, McCulloch MEB, Farquhar IL, Young R, Lefevre L, Pridans C, Tsang HG, Wu C, Afrasiabi C, Watson M, Whitelaw CB, Freeman TC, Summers KM, Archibald AL, Hume DA.
Clark EL, et al. Among authors: farquhar il.
PLoS Genet. 2017 Sep 15;13(9):e1006997. doi: 10.1371/journal.pgen.1006997. eCollection 2017 Sep.
PLoS Genet. 2017.
PMID: 28915238
Free PMC article.
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Comprehensive Transcriptional Profiling of the Gastrointestinal Tract of Ruminants from Birth to Adulthood Reveals Strong Developmental Stage Specific Gene Expression.
Bush SJ, McCulloch MEB, Muriuki C, Salavati M, Davis GM, Farquhar IL, Lisowski ZM, Archibald AL, Hume DA, Clark EL.
Bush SJ, et al. Among authors: farquhar il.
G3 (Bethesda). 2019 Feb 7;9(2):359-373. doi: 10.1534/g3.118.200810.
G3 (Bethesda). 2019.
PMID: 30530642
Free PMC article.
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Cross-species inference of long non-coding RNAs greatly expands the ruminant transcriptome.
Bush SJ, Muriuki C, McCulloch MEB, Farquhar IL, Clark EL, Hume DA.
Bush SJ, et al. Among authors: farquhar il.
Genet Sel Evol. 2018 Apr 24;50(1):20. doi: 10.1186/s12711-018-0391-0.
Genet Sel Evol. 2018.
PMID: 29690875
Free PMC article.
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