Hu YJ - Search Results

1

Integrative analysis of relative abundance data and presence-absence data of the microbiome using the LDM.

Zhu Z, Satten GA, Hu YJ. Zhu Z, et al. Among authors: hu yj. Bioinformatics. 2022 May 13;38(10):2915-2917. doi: 10.1093/bioinformatics/btac181. Bioinformatics. 2022. PMID: 35561163 Free PMC article.

2

Testing Rare-Variant Association without Calling Genotypes Allows for Systematic Differences in Sequencing between Cases and Controls.

Hu YJ, Liao P, Johnston HR, Allen AS, Satten GA. Hu YJ, et al. PLoS Genet. 2016 May 6;12(5):e1006040. doi: 10.1371/journal.pgen.1006040. eCollection 2016 May. PLoS Genet. 2016. PMID: 27152526 Free PMC article.

3

PhredEM: a phred-score-informed genotype-calling approach for next-generation sequencing studies.

Liao P, Satten GA, Hu YJ. Liao P, et al. Among authors: hu yj. Genet Epidemiol. 2017 Jul;41(5):375-387. doi: 10.1002/gepi.22048. Epub 2017 May 31. Genet Epidemiol. 2017. PMID: 28560825 Free PMC article.

4

Robust inference of population structure from next-generation sequencing data with systematic differences in sequencing.

Liao P, Satten GA, Hu YJ. Liao P, et al. Among authors: hu yj. Bioinformatics. 2018 Apr 1;34(7):1157-1163. doi: 10.1093/bioinformatics/btx708. Bioinformatics. 2018. PMID: 29186324 Free PMC article.

5

Testing hypotheses about the microbiome using the linear decomposition model (LDM).

Hu YJ, Satten GA. Hu YJ, et al. Bioinformatics. 2020 Aug 15;36(14):4106-4115. doi: 10.1093/bioinformatics/btaa260. Bioinformatics. 2020. PMID: 32315393 Free PMC article.

6

A rarefaction-based extension of the LDM for testing presence-absence associations in the microbiome.

Hu YJ, Lane A, Satten GA. Hu YJ, et al. Bioinformatics. 2021 Jul 19;37(12):1652-1657. doi: 10.1093/bioinformatics/btab012. Bioinformatics. 2021. PMID: 33479757 Free PMC article.

7

Vaginal Microbiome Composition in Early Pregnancy and Risk of Spontaneous Preterm and Early Term Birth Among African American Women.

Dunlop AL, Satten GA, Hu YJ, Knight AK, Hill CC, Wright ML, Smith AK, Read TD, Pearce BD, Corwin EJ. Dunlop AL, et al. Among authors: hu yj. Front Cell Infect Microbiol. 2021 Apr 29;11:641005. doi: 10.3389/fcimb.2021.641005. eCollection 2021. Front Cell Infect Microbiol. 2021. PMID: 33996627 Free PMC article.

8

Constraining PERMANOVA and LDM to within-set comparisons by projection improves the efficiency of analyses of matched sets of microbiome data.

Zhu Z, Satten GA, Mitchell C, Hu YJ. Zhu Z, et al. Among authors: hu yj. Microbiome. 2021 Jun 9;9(1):133. doi: 10.1186/s40168-021-01034-9. Microbiome. 2021. PMID: 34108046 Free PMC article.

9

Condomless receptive anal intercourse is associated with markers of mucosal inflammation in a cohort of men who have sex with men in Atlanta, Georgia.

Kelley CF, Pollack I, Yacoub R, Zhu Z, Van Doren VE, Gumber S, Amara RR, Fedirko V, Kraft CS, de Man TJB, Hu YJ, Grimsley Ackerley C, Sullivan PS, Bostick RM. Kelley CF, et al. Among authors: hu yj. J Int AIDS Soc. 2021 Dec;24(12):e25859. doi: 10.1002/jia2.25859. J Int AIDS Soc. 2021. PMID: 34911162 Free PMC article.

10

[No title available]

[No authors listed] [No authors listed] PMID: 35333323

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